Pairwise Alignments

Query, 928 a.a., DNA mismatch repair protein MutS from Xanthobacter sp. DMC5

Subject, 862 a.a., DNA mismatch repair protein MutS from Vibrio cholerae E7946 ATCC 55056

 Score =  550 bits (1417), Expect = e-160
 Identities = 352/893 (39%), Positives = 502/893 (56%), Gaps = 57/893 (6%)

Query: 42  TPMMAQYMEIKAANPDSLLFYRMGDFYELFFADAEQASQALGIVLTKRGKHLGEDIPMCG 101
           TPMM QY+ +KA NPD LLFYRMGDFYELF+ DA++AS+ L I LTKRG   GE IPM G
Sbjct: 16  TPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGEPIPMAG 75

Query: 102 VPIDRAEEYLHKLIALGFRVAVCEQLEDPAEAKKRGGKSVVRRDVTRLVTPGTITEDSLL 161
           VP    E YL KL+ +G  VA+CEQ+ DPA +K       V R V R+VTPGT+T+++LL
Sbjct: 76  VPFHAVEGYLAKLVQMGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTVTDEALL 130

Query: 162 DARRENVLAALARVRAGSGADDFAYAIAFTDMSTGAFRVAGT-TRAALSGDLARVDPAEL 220
             R +N++AA+       G        A  D+++G F+++   T   ++ +L R  P EL
Sbjct: 131 SERVDNLIAAIYHHNGRFG-------YATMDITSGRFQLSEPQTEEEMAAELQRTSPREL 183

Query: 221 LVSDALLDDAELRAMLRDLPAVTPLPRQSFDGAGAEKRLADFYGVAALDAFGAF-ARAEL 279
           L  +    D     ++         P   F+   A+++L   +G   L  FG   A+  L
Sbjct: 184 LFPE----DFSPVHLMASRQGNRRRPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGL 239

Query: 280 IAAAAVVAYVDRTQLGAKPLLARPVREAEGGIMAIDAGTRANLELVRTTSGDRRGSLLAA 339
            AA  ++ YV  TQ  A P +     + +   + +DA TR NLEL    +G    +L   
Sbjct: 240 CAAGCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEV 299

Query: 340 VDRTVTAAGARLLARRIAEPLTDLAAIRARHDGVGHLCEDGALRRALREALARAPDMARA 399
           +D   T  G+R+L R I +P+ D A +  R D +  L E  AL   L   L +  D+ R 
Sbjct: 300 LDHCATPMGSRMLKRWIHQPMRDNATLNQRLDAITELKET-ALYGELHPVLKQIGDIERI 358

Query: 400 VTRLALQRGGPRDLAAVRDGLDGALAIAGLIGPDAPDDLSRAARALSRAPHAVALD---- 455
           + RLAL+   PRDLA +R  +     +  ++       L+          HA  +D    
Sbjct: 359 LARLALRSARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRT------HAEPMDELCD 412

Query: 456 -LASALAENLPVHRRDGGFVREGCDPELDATRALRDESRRVVAALERRYVEETGVRSLKI 514
            L  A+ EN PV  RDGG + +G   ELD  R L + +   +  LE    +  G+ +LK+
Sbjct: 413 LLERAIKENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKV 472

Query: 515 RHNAVLGYYVEVTQQNADRLREPPHDAVFVHRQTMAGAMRFSSVELGDLESRIASAGERA 574
            +N V G+Y++V++  +  +  PPH   +V RQT+  A R+   EL   E ++ ++  RA
Sbjct: 473 GYNNVHGFYIQVSRGQSHLV--PPH---YVRRQTLKNAERYIIEELKQHEDKVLNSKSRA 527

Query: 575 LALEQAIFERLSAAVVAETDAIRVAADALAELDVASGLAELAATEAHVRPHMEEGVAFAI 634
           LALE+ ++E L   ++   + ++  A ++A+LDV   LAE A    + RP + +     I
Sbjct: 528 LALEKQLWEELFDLLMPHLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHI 587

Query: 635 VGGRHPVVEQALARDGGPFVPNDCDLSPPEGDKDGRIVLVTGPNMAGKSTFLRQNALIAV 694
            GGRHPVVE+ +     PF+ N  +L+P       R++++TGPNM GKST++RQ ALIA+
Sbjct: 588 QGGRHPVVERVMNE---PFIANPIELNPQR-----RMLIITGPNMGGKSTYMRQTALIAL 639

Query: 695 LAQAGAFVPARSARIGVVDRLFSRVGAADDLARGRSTFMVEMVETAAILNQATPRSLVIL 754
           +A  G++VPA SA IG +DR+F+R+GA+DDLA GRSTFMVEM ETA IL+ AT  SLV++
Sbjct: 640 MAHIGSYVPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLM 699

Query: 755 DEIGRGTATFDGMSIAWASLEHLHEVNRCRALFATHFHELTALSQRCRRLSNATVKVTEW 814
           DEIGRGT+T+DG+S+AWAS E L +      LFATH+ ELT L      L+N  +   E 
Sbjct: 700 DEIGRGTSTYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVE- 758

Query: 815 HGD-VIFLHEVVPGAADRSYGIQVAKLAGLPEAVIARAKAVLAELEAAERASPAQKLIDD 873
           HGD + F+H V  GAA +SYG+ VA LAG+P+ VI  A+A L +LE          L+  
Sbjct: 759 HGDGIAFMHAVQEGAASKSYGLAVAGLAGVPKPVIKNARAKLQQLE----------LLSS 808

Query: 874 LPLFAVRPKPAEKAAQAD--PAADAVIGALDDLDPDALSPREALDALYRLKGL 924
            P    +P   + A Q    P   AV  AL  +DPD L+PR+ALD LY+LK L
Sbjct: 809 QPAETRKPSRVDIANQLSLIPEPSAVEQALAGVDPDQLTPRQALDMLYQLKKL 861