Pairwise Alignments

Query, 928 a.a., DNA mismatch repair protein MutS from Xanthobacter sp. DMC5

Subject, 854 a.a., DNA mismatch repair protein MutS (RefSeq) from Shewanella amazonensis SB2B

 Score =  573 bits (1478), Expect = e-167
 Identities = 369/891 (41%), Positives = 507/891 (56%), Gaps = 46/891 (5%)

Query: 36  VDETRVTPMMAQYMEIKAANPDSLLFYRMGDFYELFFADAEQASQALGIVLTKRGKHLGE 95
           +D  + TPMM QY+ +KAA+PD LLFYRMGDFYELF+ DA++AS+ L I LT RGK  G+
Sbjct: 7   LDLEKHTPMMRQYLTMKAAHPDMLLFYRMGDFYELFYDDAKRASEMLSISLTARGKSGGD 66

Query: 96  DIPMCGVPIDRAEEYLHKLIALGFRVAVCEQLEDPAEAKKRGGKSVVRRDVTRLVTPGTI 155
            IPM G+P    E YL KL+ LG  VA+CEQ+ DPA AK       V R V R+VTPGT+
Sbjct: 67  PIPMAGIPYHAVEGYLAKLVQLGQSVAICEQIGDPATAK-----GPVERKVVRVVTPGTL 121

Query: 156 TEDSLLDARRENVLAALARVRAGSGADDFAYAIAFTDMSTGAFRVAGT-TRAALSGDLAR 214
           T+++LL  R++N+LAA+ + + G       Y  A  D+++G F +A   +R AL  +L R
Sbjct: 122 TDEALLQERQDNLLAAVYQGKVG-------YGFATLDVASGRFVIAELPSREALEAELQR 174

Query: 215 VDPAELLVSDALLDDAELRAMLRDLPAVTPLPRQSFDGAGAEKRLADFYGVAALDAFG-A 273
             PAELL S+   D      ++  +      P   FD     K L + +G   L  FG A
Sbjct: 175 TSPAELLYSEDFGD----MGLINHIRGKRRRPEWEFDYDTCIKMLLEQFGTRDLRGFGIA 230

Query: 274 FARAELIAAAAVVAYVDRTQLGAKPLLARPVREAEGGIMAIDAGTRANLELVRTTSGDRR 333
            AR  L AA  ++ YV  TQ  A P +   VR  +G  + +DA TR NLEL  + SG R 
Sbjct: 231 DARLSLQAAGCLMQYVKDTQRTALPHINSIVRFNQGDSIILDAATRRNLELTVSLSGSRE 290

Query: 334 GSLLAAVDRTVTAAGARLLARRIAEPLTDLAAIRARHDGVGHLCEDGALRRALREALARA 393
            +L + +D TVTA G+R+L R I +PL     IR R   V  L E G L   LR  L   
Sbjct: 291 NTLASVLDNTVTAMGSRMLQRWIHQPLRCHDTIRGRQQAVQELLETG-LYEDLRAELKAL 349

Query: 394 PDMARAVTRLALQRGGPRDLAAVRDGLDGALAIAGLIGPDAPDDLSRAARALSRAPHAVA 453
            D+ R + RLAL+   PRD A +RD L     I   +       L      L   P    
Sbjct: 350 GDIERILARLALRSARPRDFARLRDALGILPLIRERLQRCDARHLKSLNILLGDFPEEYE 409

Query: 454 LDLASALAENLPVHRRDGGFVREGCDPELDATRALRDESRRVVAALERRYVEETGVRSLK 513
           L L  A+ +N PV  RDGG +REG D ELD  R L D     +  +E R  E TG+ +LK
Sbjct: 410 L-LCRAIVDNPPVLIRDGGVIREGYDSELDEWRKLSDGGIDYLEQMELREKERTGIATLK 468

Query: 514 IRHNAVLGYYVEVTQQNADRLREPPHDAVFVHRQTMAGAMRFSSVELGDLESRIASAGER 573
           +  N V GYY+EV++  +  +        +  RQT+    R+ + EL + E ++ S+  +
Sbjct: 469 VGFNRVHGYYIEVSRAQSALV-----PIAYQRRQTLKNTERYITPELKEYEEKVLSSQGK 523

Query: 574 ALALEQAIFERLSAAVVAETDAIRVAADALAELDVASGLAELAATEAHVRPHMEEGVAFA 633
           ALALE+ ++E L   ++ +   ++  A A +ELDV +  A+ A    +  P + +     
Sbjct: 524 ALALEKQLWEELFDLILPKLQELQDFALAASELDVLANFADRADLFNYHCPELSDTTGIL 583

Query: 634 IVGGRHPVVEQALARDGGPFVPNDCDLSPPEGDKDGRIVLVTGPNMAGKSTFLRQNALIA 693
           I  GRHPVVE+       PF+PN  +LS        R+++VTGPNM GKST++RQ ALI 
Sbjct: 584 IEAGRHPVVERV---SQSPFIPNPVELS-----NHRRMLIVTGPNMGGKSTYMRQVALIT 635

Query: 694 VLAQAGAFVPARSARIGVVDRLFSRVGAADDLARGRSTFMVEMVETAAILNQATPRSLVI 753
           ++A  G+FVPA  A IG VDR+F+R+GA+DDLA GRSTFMVEM ETA IL+ AT  SLV+
Sbjct: 636 LMAHIGSFVPAERALIGPVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATANSLVL 695

Query: 754 LDEIGRGTATFDGMSIAWASLEHLHEVNRCRALFATHFHELTALSQRCRRLSNATVKVTE 813
           +DEIGRGT+T+DGMS+AW++ E+L +      LFATH+ ELT L +    + N  +   E
Sbjct: 696 MDEIGRGTSTYDGMSLAWSAAEYLAQKLGAMTLFATHYFELTQLPEMLPGVHNVHLDAIE 755

Query: 814 WHGDVIFLHEVVPGAADRSYGIQVAKLAGLPEAVIARAKAVLAELEAAERASPAQKLIDD 873
               + F+H V  GAA +SYG+QVA LAG+P  VI  AK  L +LE+ +      K    
Sbjct: 756 HDDTIAFMHAVQEGAASKSYGLQVAALAGVPANVIKAAKHKLLQLESRDHGVDMSKQ-QA 814

Query: 874 LPLFAVRPKPAEKAAQADPAADAVIGALDDLDPDALSPREALDALYRLKGL 924
           LPL  + P+P+  AA+           L+ +DP+ LSPR+AL+ L+ LK L
Sbjct: 815 LPL-TMTPEPS--AAEL---------RLEAIDPNDLSPRQALELLFELKRL 853