Pairwise Alignments

Query, 881 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

 Score = 53.9 bits (128), Expect = 3e-11
 Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 19/207 (9%)

Query: 287 QNFTDRVLNLLMSDVPTLVFYFVGGWLALTGAINIGQLVAVVAAYGQIPEPLKEL--IEW 344
           Q+  D V+ ++ S +      F+    ++   +  G    V +A   +  PLK L  +  
Sbjct: 248 QSIADPVIQMIAS-LALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTS 306

Query: 345 DEKRVVAQVRYDFARYYLETQEVWPKGSQDDTGWESLPFDGGLKIADL-----GVVDPAG 399
           + +R +A  +  F    LET+       +D+  +E+   +G + + D+     G   PA 
Sbjct: 307 EFQRGMAACQTLFGLMDLETE-------RDNGKYEAERVNGEVDVKDVTFTYQGKEKPA- 358

Query: 400 SLLLDGVSLEVPAGTAVALKGPDAGGKHAVARVCGRAISLYSGSVRIGGHDLSSVPESVI 459
              L  VS  +P G  VAL G    GK  +A +  R   + SGS+ + GHD+     + +
Sbjct: 359 ---LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNL 415

Query: 460 GRHVAYAGGDPIVLNASLRDNMLCALE 486
            RH A    +  + N ++ +N+  A E
Sbjct: 416 RRHFALVSQNVHLFNDTIANNIAYAAE 442



 Score = 49.3 bits (116), Expect = 7e-10
 Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 8/152 (5%)

Query: 736 ALTVRDNLLFGRIAADRAGAAATVD---DLVRECLKQDGFIAQVERL--SLDVALGEGGL 790
           AL  ++  LF    A+    AA  +   + + +  +Q   +  +E +   LD  +GE G 
Sbjct: 420 ALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGT 479

Query: 791 PLSAAERGKLTLARCLVAEPDLLIIDDALAPLAPSEQSRLIETVLAR-REGRTTLVVLDS 849
            LS  +R ++ +AR L+ +  +LI+D+A + L  +E  R I+  L   ++ +T LV+   
Sbjct: 480 SLSGGQRQRVAIARALLRDAPVLILDEATSAL-DTESERAIQAALDELQKNKTVLVIAHR 538

Query: 850 AEPLELFAQVIVLAHGQ-VERIEGAAELSVNG 880
              +E   +++V+  G+ +ER   A  L+ +G
Sbjct: 539 LSTIEQADEILVVDEGEIIERGRHADLLAQDG 570