Pairwise Alignments

Query, 442 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) from Xanthobacter sp. DMC5

Subject, 363 a.a., 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  226 bits (575), Expect = 1e-63
 Identities = 151/399 (37%), Positives = 220/399 (55%), Gaps = 47/399 (11%)

Query: 25  RRHATVGVPVGRVMVGGGAPVVVQSMTNTDTADIAGTVRQVAALARAGSEIVRITVDRDE 84
           +R  T  V +G+V +GG  PVVVQSMTNTDT D+  TV Q+  L  AG EIVR+ V  ++
Sbjct: 4   QRKQTREVRIGKVRIGGANPVVVQSMTNTDTRDVEQTVEQIRQLQEAGCEIVRLAVLNED 63

Query: 85  AAAAVPHIYEKLLAQGIDVPLVGDFHYIGHKLLADHPACAEALAKYRINPGNVGFGDKKD 144
           AA A+     K +   + VPLV D H+     ++   A  +AL   RINPGN+G     D
Sbjct: 64  AAWAI-----KPIRSQVSVPLVADIHFDHRLAVSALEAGVDAL---RINPGNIGTRAAVD 115

Query: 145 RQFAAIVETAIRHDKPVRIGANWGSLDGELLTRLMDENARLPRPAEARAVTREALVRSAL 204
           R    +V+ A  H+  +RIG N GSL+ +L+ +                 T EA+V SA 
Sbjct: 116 R----VVDAAKAHNAVIRIGVNSGSLETDLIDQY-------------GGPTPEAMVESAF 158

Query: 205 LSAALAEEIGLGRNRIILSAKVSAVQDLIAVYSELARRSDYALHLGLTEAGMGSKGIVAS 264
               + E+   G  ++  S K S+V   I  Y+ L+ + DY LH+G+TEAG   +G + S
Sbjct: 159 RHIRMLEDRNFGDIKV--SLKSSSVSRCIEAYTLLSAKCDYPLHIGVTEAGTVLRGSIKS 216

Query: 265 TAAMGVVLQQGIGDTIRVSLTPEPNGDRTREVQVAQEILQTMGLRTFVPLVAACPGCGRT 324
              +GV+L QGIGDT+RVSLT +P      E+ VA EIL+++GLR+  P + ACP CGR 
Sbjct: 217 AVGLGVLLWQGIGDTLRVSLTSDP----VAEMAVAWEILRSLGLRSRGPEIIACPTCGRC 272

Query: 325 TSTVFQELAQSVQDMIRTRMPVWKAQYPGVETLNVAVMGCIVNGPGESKHADIGISLPGT 384
              +   LA+ V+  +              E+  VAVMGC+VNGPGE++ AD+GI+    
Sbjct: 273 EIGLI-ALAEEVERRLEGE----------TESFKVAVMGCVVNGPGEAREADLGIA---- 317

Query: 385 GETPSAPVFIDGKKVATLR-GANIQEEFRQMVEAYVAKR 422
           G      +F  G+ V T++ G+N+   F + ++ ++A R
Sbjct: 318 GGRDKGIIFRKGEIVRTVKGGSNLLAAFMEELDTFLAHR 356