Pairwise Alignments

Query, 264 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

 Score = 99.4 bits (246), Expect = 9e-26
 Identities = 78/242 (32%), Positives = 122/242 (50%), Gaps = 30/242 (12%)

Query: 17  RDLPL--LHRDGLMLIIDKPCGLPVHAGPKGGETLADHLDALRFG------LPRAPELAH 68
           +DLPL  ++ D  +++I+KP    VH G   G+     L+AL F       +PRA  + H
Sbjct: 80  QDLPLNIVYEDDDIIVINKPRDFVVHPG--AGQADKTVLNALLFHYSPIAEVPRAG-IVH 136

Query: 69  RLDKDTSGCLVLGRHGKALAQLGKLFASGAVGKTYVAVTLGAPAAEAGRIDQPLAKRSPH 128
           RLDKDT+G +V+ +   A  +L +      V + Y A+ +G   A  G ID+P+ + S  
Sbjct: 137 RLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTA-GGMIDKPIGRHSTK 195

Query: 129 RGWWMQSVPKGSPGAQEAITDFQVLHRTGDLAVIALSPVTGRTHQLRAHLSHLGTPILGD 188
           R   + SV   SP  + A+T ++V     +   + L   TGRTHQ+R H+++L  P+LGD
Sbjct: 196 RT--LMSV---SPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHMAYLQHPLLGD 250

Query: 189 AIYGGASRLPGG------------PKLHLHSRRVVVPLKAGAPPVDVSAPLPPHMCE-TL 235
             YGG +R+P G             +  LH+  +          ++  AP+P  M E TL
Sbjct: 251 TAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVPDDMVEMTL 310

Query: 236 SL 237
           +L
Sbjct: 311 AL 312