Pairwise Alignments

Query, 518 a.a., UDP-N-acetylmuramoylalanine--D-glutamate ligase from Xanthobacter sp. DMC5

Subject, 455 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase (RefSeq) from Shewanella amazonensis SB2B

 Score = 65.9 bits (159), Expect = 3e-15
 Identities = 87/352 (24%), Positives = 147/352 (41%), Gaps = 46/352 (13%)

Query: 31  GGATVVAYDDSEASRRKAGEAGILVQ----DLHDIDWTIV----QALVLAPGVPLTHPEP 82
           G   VV++ DS++ +   G   + ++    D H+           AL++   +PL  P+ 
Sbjct: 19  GEDVVVSHLDSDSRKMTVGSLFVALKGERFDGHEFAEAAAAAGASALLVERELPLALPQ- 77

Query: 83  HWSVKLAQAAGVEIIGDIELFCRERQAIARRSPFVAITGTNGKSTTTALITHILRVAGRD 142
                L  A   + +G I    R+    +     VA+TG+NGK++   ++  +L      
Sbjct: 78  -----LVVADTQKAMGQIGALVRD----SVNPVCVALTGSNGKTSVKEMVATVLSQHHSV 128

Query: 143 VQMGGNIGTAI---LSLAPPKPGRVH-VVECSSY---QIDLAPGL-DPSVGVMLNITPDH 194
           +   GN    I   L+L   + G  + V E  +    +ID    L  PSV ++ N+   H
Sbjct: 129 LFTAGNFNNEIGVPLTLLRLEQGHEYGVFELGANHKGEIDYTSSLVRPSVSLVNNVGSAH 188

Query: 195 LDRHGTIENYAAVKERLVTGVEQTGTAVVGVDDDFSAAMADRAERAGKHVV--------R 246
           L+  G+    A  K  +   + Q G  +V +DD ++  M ++ +  GK V+         
Sbjct: 189 LEGFGSEAGVAEAKSEIYLHLAQDGVGIVNLDDRYAETMLNKLK--GKRVLTFGLGAGAE 246

Query: 247 ISVRRPLPDGIWREGETLVVSEGGAEV-FRLPLGGIGSLRGAHNAQNAAAAYAACRALGV 305
           I+ R    D   R   +  +  GG  V   LPL       G H   NA A  A C ALG+
Sbjct: 247 ITAREVTADAFGR--YSFYLCHGGDHVTVSLPLA------GKHQVSNALATAAICIALGL 298

Query: 306 APEVIAVAMKRFPGLAHRMEEVGNKGKVLFVNDSKATNADAAERALTSFTDI 357
             + IA  + +   +  RM      G++L V+DS   N ++   A+    +I
Sbjct: 299 PLQEIAAGLAKLAPVKGRMMP-RQLGRLLLVDDSYNANPNSVGAAIDWLKEI 349