Pairwise Alignments

Query, 240 a.a., DNA polymerase III subunit epsilon from Xanthobacter sp. DMC5

Subject, 242 a.a., DNA polymerase III, epsilon subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  165 bits (418), Expect = 7e-46
 Identities = 85/177 (48%), Positives = 120/177 (67%), Gaps = 8/177 (4%)

Query: 2   REIVLDTETTGLE-----AYGGDRLVEIGCVEMVNRILTGNVFHVYINPQRDMPQEAFNV 56
           R+++LDTETTG+       Y G R++EIGCVE++NR LTG  +H YINP + +  EA  V
Sbjct: 9   RQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYYHQYINPGQAIDPEAIAV 68

Query: 57  HGLSAEFLSDKPIFSQVADEFLEFIQEDTLVIHNAAFDIGFLNAE---LERLGRPTIARD 113
           HG++ E ++++P F Q+A EF++FI    +V HNA FD+ F++ E   L+ LG  T    
Sbjct: 69  HGITDERVANEPRFHQIAQEFIDFISGAEIVAHNANFDVSFMDHEFSLLQPLGPKTRDIC 128

Query: 114 RVIDTLALARRKHPGGGNRLDDLMNRYGIDSSRRVKHGALLDAELLAEVYSELLGGR 170
            ++D+L +A+  HPG  N LD L  RYGID+SRR  HGALLDAE+LA+VY  + GG+
Sbjct: 129 EILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRHYHGALLDAEILADVYLSMTGGQ 185