Pairwise Alignments

Query, 346 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 233 a.a., GntR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score = 52.0 bits (123), Expect = 1e-11
 Identities = 28/67 (41%), Positives = 40/67 (59%)

Query: 31 LHERAFDILASQIASGALAPGERLLESRVAERFGISRAPARQALARLERVGLVSRSDGHG 90
          L ++A   + + I  G LAPG ++ E  +A+R+GISR P R+AL  LER  LV R    G
Sbjct: 22 LADKALQAIQTSIIKGELAPGSKINEQMLAQRYGISRGPTREALLTLERRRLVVRIPHVG 81

Query: 91 FQVMPLA 97
           +V  L+
Sbjct: 82 ARVAQLS 88



 Score = 47.8 bits (112), Expect = 3e-10
 Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 20/231 (8%)

Query: 111 ETPIQLAPESTWQRIYADVEQEVVSRTALGAFRVVENHLAAYYGVSRTVAREVLSRLNQR 170
           ETP     +   Q I   +   +    A G+ ++ E  LA  YG+SR   RE L  L +R
Sbjct: 16  ETPALTLADKALQAIQTSI---IKGELAPGS-KINEQMLAQRYGISRGPTREALLTLERR 71

Query: 171 GVLRKDSRLHWYAPALTPAYVAELFEMRAILEPAALRLAFPRLAPG---QVATLLANLRD 227
            ++ +   +      L+   + +L+ +R++LE  A  LA   + P    Q+  L+ +   
Sbjct: 72  RLVVRIPHVGARVAQLSIDELNDLYRLRSVLEGMACELAAKHITPTALMQLQRLMDSQEA 131

Query: 228 AAAHPDAV---DGARLGALENELHVGLLGRCGNATLMEAL-ATCQTLLVALTFLYVRSPQ 283
           A A  D     DG      + + H  ++   G+  L E L      LL    +      +
Sbjct: 132 ALAKGDTYFQQDG------DVDFHYRIIRASGSRHLQETLIGNLYHLLRMYRYQCTSESR 185

Query: 284 PHGREPFIAEHLDVAERLAAADVEGAADALRDHLRGSFGRAVERLDRVRRE 334
           P      IAEH  + E +AA D E A+  +R H+        +RL  ++ E
Sbjct: 186 P---TRAIAEHRRIVEAIAAGDGELASLLMRRHIEQGRINTEKRLKALQAE 233