Pairwise Alignments

Query, 403 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 361 a.a., permease PerM, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  132 bits (333), Expect = 1e-35
 Identities = 91/338 (26%), Positives = 178/338 (52%), Gaps = 18/338 (5%)

Query: 47  QARFWVGALLLTAIVLWLLSGILLPFVAGIVLAYFLNPVVARLERIGVARTLSALVVVGI 106
           QA   +  L+  A+VL+   G+L P +  +VLA+ L   VA++ ++G+ RT +A +V+ I
Sbjct: 17  QAVTLLAILVGLALVLYFAGGLLAPLLVALVLAFLLEWPVAQMLKLGINRTTAASLVLII 76

Query: 107 MLLLVMLFFLLALPILSSQLFEFIQRLPSYVTR----LQGLLTEENREWLSGIVGDRLPD 162
            L +V+L     +P +  Q    +  LPS + +    +QGL T    ++   I  ++L  
Sbjct: 77  FLGIVVLLTFGLIPSVWRQGVSLMTDLPSMIDKGLQTVQGLAT----QYPQFISVEQLNL 132

Query: 163 MQRSISDLMTQGVSHVLSLLSSVWSGGQALLSLFALLVVTPVVVFYILCDWNEMVGLVDR 222
           M   +  L+     HVL +   +     +LL L    ++ P++VF+ L D ++++    R
Sbjct: 133 MVAELKKLL--DTQHVLDIAKQLIGYSASLLVLMVYAILVPLLVFFFLKDKDQLISGSKR 190

Query: 223 LVPVPHRPVVRGLARAMDNAVAGFVRGQATVCLLLGGFYAVSLSMVGLNFGLLIGIVSGV 282
             P  +R + R +   M   +  ++RG+    +++G    +  + +GL++  L+G+++G+
Sbjct: 191 FFPT-NRQLARKVWFEMHQQIFNYIRGKVIEIVIVGVASYILFAFMGLSYSALLGVLTGL 249

Query: 283 ITFIPYVGSLTGFVLAMGVAIVQFFPDW---SMIGTVLAIFVAGQTIEGYVLAPKLVGDS 339
              IPYVG+    ++ + + +V FF  W   S  G ++  +   Q ++G VL P L  D+
Sbjct: 250 SVLIPYVGAT---LVTLPIMLVAFF-QWGFSSEFGYLMLGYGIIQALDGNVLVPILFSDA 305

Query: 340 IGVHPVWLMFALFAFGYLFGFVGLLLAVPLTAVAGVLV 377
           + +HPV ++ A+  FG L+G +G+  A+PL ++   ++
Sbjct: 306 VDLHPVIIIAAVLVFGGLWGVLGVFFAIPLASLVKAVI 343