Pairwise Alignments

Query, 290 a.a., High-affinity branched-chain amino acid transport system permease protein LivH from Xanthobacter sp. DMC5

Subject, 296 a.a., integral membrane protein of the ABC-type Nat permease for neutral amino acids NatD from Synechococcus elongatus PCC 7942

 Score =  150 bits (378), Expect = 4e-41
 Identities = 96/284 (33%), Positives = 148/284 (52%), Gaps = 8/284 (2%)

Query: 4   LIQLVLNGILLGSMYAIISVGLTLIFGIVRVVNFAHGEFLMVGMYAAYLLAAKFGLHPYA 63
           L QL +NG+  GS+ A+ + GLTLI+GI+R+ NFA GEFL +G Y   L+A   GL  + 
Sbjct: 15  LAQLAINGLATGSLLALAATGLTLIYGILRLTNFAQGEFLTLGAYFT-LVANSLGLSLWL 73

Query: 64  AAVPIVILLFAIGAAVQRFLIQPLLGAEEHIQ--IFATVGLSTALVNLALLVFGA--DLY 119
           A     I   A+    +  L +PL     +    I  T+GLS  L NL +L++GA    Y
Sbjct: 74  AIPLGAIATIALCLLGEAVLWEPLRRQRVNTTTLIILTIGLSLFLRNLVILIWGAGNQAY 133

Query: 120 SIPPSAAQGTVMVGGFSLVKGQLVMFVCALALVAGLHLFMQSTALGRAIRATAQNRTAAL 179
            +   A Q  + + G  +    L++ + A A +  LH  +Q T++G+ +RA A +   A 
Sbjct: 134 RL---AVQPALTLWGLRITLNSLLVVIGAAAALVLLHWVLQRTSIGKGMRAIADDPDLAR 190

Query: 180 LMGVKVDQIYVIAFGIGAACVGLASALVMPLYPVTPTIGTYFVLTAFVVVVLGGMRSMYG 239
           + GV V+ +    + I      +A  L   +  V PT+G   +L  F   +LGG+ S YG
Sbjct: 191 VSGVPVETVIRWTWVIAGGLTAIAGGLYGLITAVRPTMGWNLILPLFASAILGGIGSPYG 250

Query: 240 AFFGAMIIGLVDSLSGYYIAPDLKEVVYFAIFLAILIFKPTGLF 283
           A  G +I+G    LS Y++  + K  V F I + +L+ +P GLF
Sbjct: 251 AIAGGLILGFAQELSTYWLPAEYKLAVAFVILIGVLVIRPQGLF 294