Pairwise Alignments

Query, 346 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

 Score =  166 bits (421), Expect = 5e-46
 Identities = 95/271 (35%), Positives = 149/271 (54%), Gaps = 2/271 (0%)

Query: 72  ALLVFLSNPTAVAGLLILAVVVGAALAAPILFPDDPLEMAGRPLQWPGQNPRFPLGTDAL 131
           A + F+ N  A+  L +L ++  A +  P +F     E         G +     GTDAL
Sbjct: 29  ARIRFMRNKAAMVSLFVLMLITLAVVFLP-MFSAYSYEDTDWYAMHAGPSAEHWFGTDAL 87

Query: 132 GRDVLAGLVHGARVSLLVGACATLAGLLAGILVGATAGYFGGVVDDVLSKLIEIFQTVPG 191
           GRD+    + G R+SL+VG    L  +L G L GA +G+ GG  D V+ +++EI   +P 
Sbjct: 88  GRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILEILYAIPF 147

Query: 192 FILLIVLVAIAQPSVPAIALAIAAVSWPQVARLVRAQFRAIKEKDFVAAARALGFGHGRI 251
             L+IVLV     ++  I +AI A++W  +AR+VR Q  +++ K+F+ AA   G     I
Sbjct: 148 MFLVIVLVTFFGRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWNI 207

Query: 252 IFREILPNALPPVIVLASVTVATAILMESALSFMGLG-DPNVVSWGSMIGTGRDLLRTAW 310
           I R I+PN L  V V +++ + + IL ES LSF+GLG    + SWG+++  G + +  A 
Sbjct: 208 ITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGALLQEGANTMEVAI 267

Query: 311 YLSAVPGVAIVLTVLSLNLIGDGLNEALNPR 341
           +    P   +VLT+   N +GDGL +AL+P+
Sbjct: 268 WQLLFPAAFMVLTLFCFNYVGDGLRDALDPK 298