Pairwise Alignments

Query, 346 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  168 bits (426), Expect = 2e-46
 Identities = 110/296 (37%), Positives = 155/296 (52%), Gaps = 32/296 (10%)

Query: 79  NPTAVAGLLILAVVVGAALAAPILFPDDPLEMAGRPLQWPG-------QNPR-------- 123
           N  A+ G+ IL +    A+AAP+L   +P +  G P ++P         NP         
Sbjct: 11  NRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPDGWIAENLA 70

Query: 124 -------------FPLGTDALGRDVLAGLVHGARVSLLVGACATLAGLLAGILVGATAGY 170
                          LGT  +GRDV + + +GARVSL VG  A +       ++G +AGY
Sbjct: 71  TDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIGVSAGY 130

Query: 171 FGGVVDDVLSKLIEIFQTVPGFILLIVLVAIAQPSVP-AIALAIAAVSWPQVARLVRAQF 229
           FGG +DD L+  + I   +P + LL VL A    + P  IAL I   SW   AR+VR+Q 
Sbjct: 131 FGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAWGARVVRSQT 190

Query: 230 RAIKEKDFVAAARALGFGHGRIIFREILPNALPPVIVLASVTVATAILMESALSFMGLGD 289
            A++EK+FV AA  LG    RIIF EILPN +  V      +V  AI+ME+ +SF+GLGD
Sbjct: 191 MALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATISFLGLGD 250

Query: 290 PNVVSWGSM---IGTGRDLLRTAWYLSAVPGVAIVLTVLSLNLIGDGLNEALNPRL 342
           PN +SWG M   + T   +L  AW+    P +++ L V  L L+   ++E  NP+L
Sbjct: 251 PNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIANPQL 306