Pairwise Alignments

Query, 666 a.a., RNA polymerase sigma factor RpoD from Xanthobacter sp. DMC5

Subject, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

 Score =  218 bits (555), Expect = 3e-61
 Identities = 102/225 (45%), Positives = 162/225 (72%)

Query: 428 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 487
           A+K M+E+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 91  ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 150

Query: 488 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLGMPLEKV 547
           IRQ I R++ +Q RTIR+P+H+++ +N  +RT+R++   +  EPTPEE+A +L  P++ V
Sbjct: 151 IRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDV 210

Query: 548 RKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPR 607
            K+L++ +   S++TPIG + D  L D + D +   P  +    ++RE+    L  L P+
Sbjct: 211 TKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPK 270

Query: 608 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 652
           ++ VL  RFG+      TLEEVG++ ++TRER+RQI+ + LR+L+
Sbjct: 271 QKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315



 Score = 35.8 bits (81), Expect = 3e-06
 Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 4/120 (3%)

Query: 77  VIEAEEAEAEEGGEEAETADEPEEAEGGELTEAAPRAVARAETKSEPAERTDDPVRMYLR 136
           V + EE + E+  E  E  +   E    E   A   A      + + + ++ D  +MYL 
Sbjct: 7   VTKVEEFDFED--EALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLS 64

Query: 137 EMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELTEGRVLLRDIID 196
           E+G   LL+ E E+  A+R   G EA    + ES L    + I R     G  LL D+I+
Sbjct: 65  EIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRL-VVKISRRYSNRGLALL-DLIE 122