Pairwise Alignments

Query, 666 a.a., RNA polymerase sigma factor RpoD from Xanthobacter sp. DMC5

Subject, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

 Score =  531 bits (1369), Expect = e-155
 Identities = 320/643 (49%), Positives = 417/643 (64%), Gaps = 35/643 (5%)

Query: 31  VRKMIKNAKRRGYVTYEQLNEVMPSEEVTSEQIEDTLAMLNDMGINVIE-AEEAEAEEGG 89
           +++++   K +GY+TY ++N+ +P+E V SEQ+ED + M+NDMGI V+E A +A+     
Sbjct: 9   LKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDADDLALS 68

Query: 90  EEAETADEPEEAEGGELTEAAPRAVARAETKSEPAERTDDPVRMYLREMGSVELLSREGE 149
           ++    DE       +  EAA  A++  E++     RT DPVRMY+REMG+VELL+REGE
Sbjct: 69  DDTTITDE-------DAAEAAAAALSSVESE---IGRTTDPVRMYMREMGTVELLTREGE 118

Query: 150 IAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELTEGRVLLRDIIDLEATYAGPEGKNP 209
           I IAKRIE G   + + + E P T   I+   D +    + L D+I         E + P
Sbjct: 119 IDIAKRIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAP 178

Query: 210 PAA-LGEEAALAPEAGEDGLLGDGAGPEGEEDDMENSMSLAAMEAEIKPKVV-ETFDRIH 267
            A  +G E + A  A ED  + +    E E++D +   S +  E  I P++  E F+ + 
Sbjct: 179 TATHIGSELSEADLADEDDAVVEDED-EDEDEDGDGESSDSEEEVGIDPELAREKFNELR 237

Query: 268 SSYTKLRRLQDQNVESKLKNETLSPAQERKAKKLKEELVGDV-KSLSLNQARIDALVEQL 326
             +        QN++  +        Q  +A     +LV D+ +   L   + D LVE L
Sbjct: 238 GKF--------QNLQLAVNEFGRDSHQASEAS----DLVLDIFREFRLTPKQFDHLVETL 285

Query: 327 YEINKRLVGYEGRLLR-LADSYGVSRDDFLKNYMGAELDPKWVLRISKLGTRGWKGFVAH 385
                R+   E  +++ + +   + +  F+  + G E + +W+ ++        K +VA 
Sbjct: 286 RTSMDRVRTQERLVMKAVVEVAKMPKKSFIALFTGNESNEEWLDKVLASD----KPYVAK 341

Query: 386 EKDTIHEIRGDIHALAT---ETGLEIAEFRKIVQMVQKGEKEARQAKKEMVEANLRLVIS 442
            ++   EIR  I  L     ET L +   + I + +  GE +AR+AKKEMVEANLRLVIS
Sbjct: 342 VREQEEEIRRSIQKLQMIEQETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVIS 401

Query: 443 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 502
           IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART
Sbjct: 402 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 461

Query: 503 IRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPISLET 562
           IRIPVHMIETINK+ R SRQML E+GREP PEELAE++ MP +K+RKVLKIAKEPIS+ET
Sbjct: 462 IRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMET 521

Query: 563 PIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNT 622
           PIGD+EDSHLGDFIED    LP+D+A  ++L+  T  VLA LTPRE +VLRMRFGI MNT
Sbjct: 522 PIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNT 581

Query: 623 DHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 665
           DHTLEEVG+QF VTRERIRQIEAKALRKL+HPSRS  LRSFLD
Sbjct: 582 DHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 624