Pairwise Alignments

Query, 666 a.a., RNA polymerase sigma factor RpoD from Xanthobacter sp. DMC5

Subject, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

 Score =  102 bits (254), Expect = 2e-26
 Identities = 71/235 (30%), Positives = 126/235 (53%), Gaps = 13/235 (5%)

Query: 428 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 487
           A K ++ ++LR V+ +A+ Y+  GL   DL+QEGNIGLMKAV +F    G +  ++A  W
Sbjct: 49  AAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHW 108

Query: 488 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIG--REPTPEELAEKLGMPLE 545
           I+  I   +    R ++I     +   K+    R+    +G       E +A +LG+   
Sbjct: 109 IKAEIHEYVLRNWRIVKIATTKAQ--RKLFFNLRKSKKRLGWFNNGEVETVARELGVEPA 166

Query: 546 KVRKV-LKIAKEPISLETPIGDEEDSHLGD----FIEDKNAILPIDAAIQSNLRETTTRV 600
           +VR++  ++A +  + E    D+E+         ++EDK++ L  +   ++    TT R+
Sbjct: 167 EVREMESRLAAQDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRL 226

Query: 601 ---LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 652
              LASL  R + ++R R+ +  +   TL+++ + + V+ ERIRQ+E  A+RKLK
Sbjct: 227 SMALASLDERSQHIVRARW-LDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLK 280