Pairwise Alignments

Query, 666 a.a., RNA polymerase sigma factor RpoD from Xanthobacter sp. DMC5

Subject, 310 a.a., principal RNA polymerase sigma factor SigA from Synechococcus elongatus PCC 7942

 Score =  233 bits (593), Expect = 1e-65
 Identities = 112/236 (47%), Positives = 173/236 (73%), Gaps = 1/236 (0%)

Query: 426 RQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 485
           ++AK+ M++ANLRLV+S+AKKY  +GL+FLDLIQEG +GL +AV+KF+  +GYKFSTYA 
Sbjct: 73  QRAKERMIKANLRLVVSVAKKYQGKGLEFLDLIQEGALGLERAVEKFDPSKGYKFSTYAF 132

Query: 486 WWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLGMPLE 545
           WWIRQ++TR+IA Q+RTIR+PVH+ E +++I + +R++ HE+GR P+ +E+AE + +PL 
Sbjct: 133 WWIRQSMTRAIACQSRTIRLPVHLTERLSQIRKVTRELAHELGRLPSRQEIAEAVQLPLN 192

Query: 546 KVRKVLKIAKEPISLETPI-GDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASL 604
            +  +L+ +++  SL+ P+ G++  S LG+ I D N   P+D    +  RE     L  L
Sbjct: 193 DLETILRQSRQCTSLDAPVSGEDGKSFLGELIADPNGNEPMDIMENAMQREQLDAWLEHL 252

Query: 605 TPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKL 660
           TP+E +VL +RFG+G    HTL E+G+   V+RER+RQ+E KALRKL++ ++  ++
Sbjct: 253 TPQERQVLYLRFGLGDGERHTLAEIGRMMEVSRERVRQVEVKALRKLRNLTKRSRI 308