Pairwise Alignments

Query, 666 a.a., RNA polymerase sigma factor RpoD from Xanthobacter sp. DMC5

Subject, 684 a.a., RNA polymerase sigma factor RpoD from Sinorhizobium meliloti 1021

 Score =  958 bits (2476), Expect = 0.0
 Identities = 514/686 (74%), Positives = 569/686 (82%), Gaps = 22/686 (3%)

Query: 1   MAKQSSEATEAPEKETDAPDGPLLDLSDAAVRKMIKNAKRRGYVTYEQLNEVMPSEEVTS 60
           MA +  E  EA  +   APDGPLLDLSD AV+KMIK AK+RGYVT ++LN V+PSEEVTS
Sbjct: 1   MATKVKENEEADVEREGAPDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTS 60

Query: 61  EQIEDTLAMLNDMGINVIEAEEAEAEEGGEEAETADEPEEAEGGELTEAAPRAVARAETK 120
           EQIEDT++ML+DMGINVIE EEAE     ++ + ADE E +EGGEL  A+  A+A A  K
Sbjct: 61  EQIEDTMSMLSDMGINVIEDEEAEEAAASDDDDGADEGE-SEGGELAPASGTALA-ASKK 118

Query: 121 SEPAERTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIW 180
            EP +RTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRE MIAGLCESPLTFQA+IIW
Sbjct: 119 KEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIW 178

Query: 181 RDELTEGRVLLRDIIDLEATYAGPEGKNPPAALGEEAALAPE---------------AGE 225
           RDEL EG+ LLR+IIDLE TY+GPE K  P     E   A                 A +
Sbjct: 179 RDELNEGQTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKVRRTRTAAND 238

Query: 226 DGLL---GDGAGPEGEE-DDMENSMSLAAMEAEIKPKVVETFDRIHSSYTKLRRLQDQNV 281
           D +    G+G  PE EE DD E+++SLAAMEAE++P+V+ET D I  +Y KLR+LQDQ V
Sbjct: 239 DDITNVGGEGQAPEEEEEDDDESNLSLAAMEAELRPQVMETLDVIAETYKKLRKLQDQQV 298

Query: 282 ESKLK-NETLSPAQERKAKKLKEELVGDVKSLSLNQARIDALVEQLYEINKRLVGYEGRL 340
           E++L    TLSPAQER+ K+LK+EL+  VKSLSLNQ RIDALVEQLY+I+KRL   EGRL
Sbjct: 299 EARLAATGTLSPAQERRYKELKDELIKAVKSLSLNQNRIDALVEQLYDISKRLTQNEGRL 358

Query: 341 LRLADSYGVSRDDFLKNYMGAELDPKWVLRISKLGTRGWKGFVAHEKDTIHEIRGDIHAL 400
           LRLA+SYGV R+ FL+ Y GAELDP W+  IS L  +GWK F   E  TI +IR +I  L
Sbjct: 359 LRLAESYGVKREAFLEQYSGAELDPNWMKSISNLAGKGWKEFARAENQTIRDIRQEIQNL 418

Query: 401 ATETGLEIAEFRKIVQMVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 460
           ATETG+ IAEFR+IV MVQKGE+EAR AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 419 ATETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 478

Query: 461 GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTS 520
           GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTS
Sbjct: 479 GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTS 538

Query: 521 RQMLHEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKN 580
           RQMLHEIGREPTPEELAEKL MPLEKVRKVLKIAKEPISLETP+GDEEDSHLGDFIEDKN
Sbjct: 539 RQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKN 598

Query: 581 AILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERI 640
           A+LPIDAAIQ+NLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERI
Sbjct: 599 ALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERI 658

Query: 641 RQIEAKALRKLKHPSRSRKLRSFLDN 666
           RQIEAKALRKLKHPSRSRKLRSFLD+
Sbjct: 659 RQIEAKALRKLKHPSRSRKLRSFLDS 684