Pairwise Alignments

Query, 666 a.a., RNA polymerase sigma factor RpoD from Xanthobacter sp. DMC5

Subject, 299 a.a., Sigma 32 (RpoH) (NCBI) from Rhodospirillum rubrum S1H

 Score =  103 bits (257), Expect = 1e-26
 Identities = 74/237 (31%), Positives = 120/237 (50%), Gaps = 15/237 (6%)

Query: 427 QAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 486
           +A   +V ++LRLV  IA  Y   GL   ++I EGN+GLM+AV +F+  RG++ +TYA W
Sbjct: 48  EAAHRLVTSHLRLVAKIAMGYRGYGLPMGEVISEGNVGLMQAVKRFDPERGFRLATYAMW 107

Query: 487 WIRQAITRSIADQARTIRIPV-----HMIETINKIVRTSRQMLHEIGREPTP-EELAEKL 540
           WIR AI   I      +++        +   + K ++   Q++ E    P    ++A KL
Sbjct: 108 WIRAAIQEYILHSWSLVKMGTTAAQKKLFFNLRK-MKGQLQLMDEGDMHPDKVTQIATKL 166

Query: 541 GMPLEKVRKVLKIAKEP-ISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNL---RET 596
           G+P + V  + +    P  SL  P+  + D    D++ D++       A    +   R  
Sbjct: 167 GVPEQDVINMNRRLSSPDHSLNAPVRMDGDGEWQDWLVDESDDQETTLAESQEMGQRRAL 226

Query: 597 TTRVLASLTPREERVLRMRFGIGMNTDH-TLEEVGQQFSVTRERIRQIEAKALRKLK 652
            +  L SL  RE  +L  R    +  D  TLE++ Q + ++RER+RQIE +A  KL+
Sbjct: 227 LSGALKSLNERERHILTQR---RLRDDPVTLEDLSQHYGISRERVRQIEVRAFEKLQ 280