Pairwise Alignments

Query, 464 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 541 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

 Score =  211 bits (537), Expect = 5e-59
 Identities = 109/311 (35%), Positives = 175/311 (56%), Gaps = 11/311 (3%)

Query: 4   DPVTLARMQFAFTVSFHVIFPAFTIGLSAFIATLELIWLKTGKDVFHRLARFWTKIFAVS 63
           D V L+R+QFA T  +H +F   T+G++  +A +E +++ T K ++  + +FW K+F ++
Sbjct: 16  DVVDLSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGIN 75

Query: 64  FAMGVVSGIVLSYQFGTNWSRYAEFVGSVIAPLIGFEVLTAFFLEATFLGIMLFGWNRVP 123
           FA+GV +G+ + +QFGTNWS Y+ +VG +    +  E L AFFLE+TF+G+  FGW+R+ 
Sbjct: 76  FALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWDRLS 135

Query: 124 PWLHVLSCCVVAFGTFMSAFWILAANSWMQTPAGYEIRNGV--GYPLDWLEIIFNPSFHW 181
              H++   +VA G+  SA WIL AN WMQ P G E          + + +++ NP    
Sbjct: 136 KRQHLVVTWLVALGSNFSALWILVANGWMQNPVGSEFNFETMRMEMVSFADVVLNPVAQV 195

Query: 182 RLPHMLLAAYLTTSLVVLSVGARYLLAGK---FKDESKVMMVMGIGMLAIVGPIQAFVGD 238
           +  H + A Y T ++ +L + A YLL G+   F   S   +    GM +++  I   +GD
Sbjct: 196 KFVHTVAAGYTTGAMFILGISAYYLLKGRDVAFARRS-FAIAASFGMASVLSVI--VLGD 252

Query: 239 SHGLNTAHYQPAKIAAVEAHWDSTKPAP--LVLFAWPDEKAEKNLFEISIPHGASLMITH 296
             G      Q  K+AA+E+ W  T+PAP    LF  P+++  +  + I IP    ++ T 
Sbjct: 253 ESGYELGEVQRVKLAAIESEW-HTEPAPAAFTLFGIPNQEEMRTDYAIKIPFALGIIATR 311

Query: 297 SLDGLFPGLKD 307
           SLD    GL+D
Sbjct: 312 SLDEQVVGLRD 322



 Score = 66.2 bits (160), Expect = 3e-15
 Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 4/123 (3%)

Query: 314 PPVFGPFFGFRAMVGVGVVMILLGWIGAWLIFKGRETTT--RWYLVVTSWAWPLGFIAIL 371
           P V+  F+ FR MV  G +M+++   GA  I   R+     +W L    ++ PL +IA+ 
Sbjct: 394 PTVWPLFWSFRIMVACGFIMLVV--FGAAFIQTCRQKIEQKKWVLKAALFSIPLPWIAVE 451

Query: 372 SGWIVTEQGRQPWVVEGLLRTEDAMSPLAGWTVGLSLTLFIIIYAVIFATGIHFMNRLIV 431
           +GW V E GRQPW V  +L    A S L+   +  S+   + +Y +     ++ M +   
Sbjct: 452 TGWFVAEYGRQPWAVGEILPVNVAASALSAGEIITSMLAILALYTIFLIAEVYLMVKFTR 511

Query: 432 RGP 434
           +GP
Sbjct: 512 KGP 514