Pairwise Alignments

Query, 464 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 518 a.a., cytochrome bd-I oxidase subunit I (RefSeq) from Shewanella amazonensis SB2B

 Score =  204 bits (518), Expect = 7e-57
 Identities = 108/310 (34%), Positives = 172/310 (55%), Gaps = 13/310 (4%)

Query: 6   VTLARMQFAFTVSFHVIFPAFTIGLSAFIATLELIWLKTGKDVFHRLARFWTKIFAVSFA 65
           V L+R+QFA T  +H +F   T+G++  +A +E +++ T K ++  + +FW K+F ++FA
Sbjct: 7   VELSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTNKQIYKDMTKFWGKLFGINFA 66

Query: 66  MGVVSGIVLSYQFGTNWSRYAEFVGSVIAPLIGFEVLTAFFLEATFLGIMLFGWNRVPPW 125
           +GV +G+ + +QFGTNWS Y+ +VG +    +  E L AFFLE+TF+G+  FGW+R    
Sbjct: 67  LGVTTGLAMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGMFFFGWDRFSKR 126

Query: 126 LHVLSCCVVAFGTFMSAFWILAANSWMQTPAG--YEIRNGVGYPLDWLEIIFNPSFHWRL 183
            H+    ++A GT MSA WIL AN WMQ P G  +           + E++FNP    + 
Sbjct: 127 QHLTVTWLMALGTNMSALWILVANGWMQNPVGSVFNYETMRMEMTSFAEVVFNPVAQVKF 186

Query: 184 PHMLLAAYLTTSLVVLSVGARYLLAGKFKD----ESKVMMVMGIGMLAIVGPIQAFVGDS 239
            H + + Y+  ++ VL++ A Y+L  K +D         +    GM +I+  I   +GD 
Sbjct: 187 VHTVASGYVAGAMFVLAISAYYIL--KKRDLPFARRSFAIAASFGMASILSVI--VLGDE 242

Query: 240 HGLNTAHYQPAKIAAVEAHWDSTKPAP--LVLFAWPDEKAEKNLFEISIPHGASLMITHS 297
            G      Q  K+AAVEA W  T+PAP    +  +P+++       I IP+   ++ T S
Sbjct: 243 SGYKVGEVQRVKLAAVEAEW-HTEPAPASFTVVGFPNQETMHTDGAIKIPYAMGIIATRS 301

Query: 298 LDGLFPGLKD 307
           LD    GL+D
Sbjct: 302 LDEEVTGLRD 311



 Score = 70.5 bits (171), Expect = 1e-16
 Identities = 39/121 (32%), Positives = 59/121 (48%)

Query: 314 PPVFGPFFGFRAMVGVGVVMILLGWIGAWLIFKGRETTTRWYLVVTSWAWPLGFIAILSG 373
           P V   F+ FR MVG+GV+M+ +     W   + R    +W L    ++ PL +IAI  G
Sbjct: 383 PSVAPLFWSFRVMVGLGVIMLFVFAAAFWQSTRHRIEEKKWVLKAALYSLPLPWIAIECG 442

Query: 374 WIVTEQGRQPWVVEGLLRTEDAMSPLAGWTVGLSLTLFIIIYAVIFATGIHFMNRLIVRG 433
           W V E GRQPW +  +L T  + S L    +  S+    + Y+V+    +  M +    G
Sbjct: 443 WFVAEYGRQPWTISEVLPTFMSASSLNPSDLWFSIASITLFYSVLLVIELFLMFKYARLG 502

Query: 434 P 434
           P
Sbjct: 503 P 503