Pairwise Alignments

Query, 742 a.a., Secretin XpsD from Xanthobacter sp. DMC5

Subject, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

 Score =  130 bits (328), Expect = 2e-34
 Identities = 131/517 (25%), Positives = 235/517 (45%), Gaps = 71/517 (13%)

Query: 251 IYPLRNSAPEPLIAELETLLD-AGEGGLSHKMVKFQAINRMNSVMVVAKKPDLLRTAATW 309
           +  ++N +   L   L  L+D AG G + H    +   N    ++++  +  ++   A  
Sbjct: 128 VVAVKNVSVRELSPLLRQLIDNAGAGNVVH----YDPAN----IILITGRAAVVNRLAEI 179

Query: 310 IERLDRSDSSVGVRVYRLRYGEARQTARVLNELFNGTSSQGLDQASNQIAPGSGSSASSN 369
           I R+D++     + V  L    A +  R++  L   T +Q   +    + P   +   +N
Sbjct: 180 IRRVDQAGDKE-IEVVELNNASAAEMVRIVEALNKTTDAQNTPEF---LKPKFVADERTN 235

Query: 370 GGGSNGPMSVQQRLG----QTPTQNQGQGG-----------QNAQPVNRGETDNELQGGS 414
               +G   V++RL     Q   +   +G            ++   V +G ++N LQ   
Sbjct: 236 SILISGDPKVRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSEN-LQAEK 294

Query: 415 GPSGGGGAILSGIRITADQVNNSLLIYASQENYRIIERTLLQLDQPQLQVAIEATVAEVT 474
           G      +  + + I A    NSL++ A Q+    +   + QLD  + QV IEA + E+ 
Sbjct: 295 GTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMA 354

Query: 475 LNDQLAYGVQF-FLTSKDLGLGKNNGSAV------------------------NTLSSEI 509
             D +  GVQ+  L S  +    N G+++                        N L +E 
Sbjct: 355 EGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNET 414

Query: 510 TNQA--INRVLPGFNLLIGRENQPKM-----ILDALHTVTDVKVLSNPSVVVVDNQKATL 562
           T       ++    + + G      M     +++A+   +   +LS+PS+ V+DN +A+ 
Sbjct: 415 TTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASF 474

Query: 563 QVGDEVPVSTGSATVLTSSNTVVNTIEYKNTGIILHVTPRVNVNGQVRLDIEQEISNVTK 622
            VG+EVPV TGS T  ++++    T++ K  GI L V P++N    V+L+IEQE+SNV  
Sbjct: 475 IVGEEVPVITGS-TAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVLG 533

Query: 623 QPTANGSSSDGSTLTPTVSQRRVKSTIAVTSGQTVLLAGLISERSDGVRQGVPVLDQIPG 682
              ANG+      +    ++R++ +++ V  GQ ++L GLI ER+      VP+L  IP 
Sbjct: 534 ---ANGA------VDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPL 584

Query: 683 VGDAFAHKDTTVKRTELIIFIRPQIIRDNMDAHTVAE 719
           +G  F    + V++  L++FI+P IIRD + A  + +
Sbjct: 585 LGQLFRSTSSQVEKKNLMVFIKPTIIRDGVTADGITQ 621