Pairwise Alignments

Query, 337 a.a., Putative amino-acid ABC transporter-binding protein YhdW from Xanthobacter sp. DMC5

Subject, 340 a.a., Lysine-arginine-ornithine-binding periplasmic protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  391 bits (1004), Expect = e-113
 Identities = 188/337 (55%), Positives = 236/337 (70%)

Query: 1   MKTILALMAGAALALGATAATAQTLKTVKDRGELVCGVSKGLPGFSAQDASGKWTGFDVD 60
           M   LA    A +    +A  A TL TVK RGE+ CGV+ GLPGF+  D  G WTG DVD
Sbjct: 4   MIAALAAFGAAGVIASGSAMAASTLDTVKSRGEVTCGVNNGLPGFALPDDKGHWTGIDVD 63

Query: 61  VCKALAAAIFDDANKVKYVPLTADERFPALTKGDIDVLSRNSTWTLEREAKLGLLFTAIN 120
           +C+A+AAA+F DA KVK+VPL A ERF AL  G+IDVLSRN+TWT  R+A LGL+F  +N
Sbjct: 64  ICRAVAAAVFGDAKKVKFVPLNAKERFTALQSGEIDVLSRNTTWTQTRDASLGLIFAGVN 123

Query: 121 YYDGQGFLVRDARKVTSALELDKSKVCVQAGTTAESNTKDYFAANGMTLELVTLPTSGEL 180
           YYDGQGF+V+    V+SA EL+ + +C+Q+GTT E N  DYF AN MT   V   TS + 
Sbjct: 124 YYDGQGFMVKKELGVSSAKELNGASICIQSGTTTELNLADYFRANAMTYSPVVFDTSDQT 183

Query: 181 VKAYDEGKCDTLTTDVSQLYALRLTMAKPGDHIVLPDVISKEPLGPVVRQGDDQWFNLVK 240
           V+ +  G+CD LT+D SQLYALR+ +  P   IVLP+VISKEPLGP+VRQGDDQW N+V+
Sbjct: 184 VQGFAGGRCDVLTSDQSQLYALRIKLEDPKSAIVLPEVISKEPLGPMVRQGDDQWLNIVR 243

Query: 241 WTVYAMINAEELGVATNTLDAAIKSQKPEVKRLVGNEGNYGEELGVTKDFVVRIVKAVGN 300
           W+++A +NAEELGV +   D         VKRL+G EG  G++LG+  D+   IVK VGN
Sbjct: 244 WSLFAQLNAEELGVTSANADEVKAGTDQNVKRLLGTEGEMGKQLGLGNDWAYAIVKQVGN 303

Query: 301 YGESFERNVGAASKLGIPRGINQLWSMGGIQYAPPVR 337
           YGE FERN+G  S L I RG+N LW+ GGIQYAPP+R
Sbjct: 304 YGEMFERNIGKGSPLEIERGLNALWNKGGIQYAPPIR 340