Pairwise Alignments

Query, 193 a.a., ECF RNA polymerase sigma factor RpoE from Xanthobacter sp. DMC5

Subject, 180 a.a., RNA polymerase ECF sigma factor from Sinorhizobium meliloti 1021

 Score = 61.2 bits (147), Expect = 1e-14
 Identities = 49/158 (31%), Positives = 72/158 (45%), Gaps = 13/158 (8%)

Query: 34  GRLFRHFAPRVKSYLVRNGLSANAAEELAQETLLTVWRKAAYFDP-TRAAASTWIFTIAR 92
           G     F P ++ + +    S + A++L Q         A  F+P TR  A  WIF I R
Sbjct: 9   GERLMAFLPNLRRFAISLCGSRDVADDLVQSACERALASAERFEPGTRFDA--WIFRILR 66

Query: 93  NLSIDLKRRERYGDTYQAEAHEDEVDETSGETILMTAEREAR-----VRAALAKLSEEQA 147
           NL ID  RR++            ++  +SGE      E EAR     V  A+ +L +EQ 
Sbjct: 67  NLWIDQVRRQKTAGVQDDITERHDIAGSSGER-----ETEARLTLKTVAEAITELPDEQR 121

Query: 148 TIVRLSFFQEKPHSQIAQELGIPLGTAKSRVRLALNRL 185
            +V L   +E  + + A  +GIP+GT  SR+  A   L
Sbjct: 122 EVVLLVCVEELSYREAADVMGIPIGTVMSRLMRARRSL 159