Pairwise Alignments

Query, 176 a.a., Transcription termination/antitermination protein NusG from Xanthobacter sp. DMC5

Subject, 166 a.a., transcription antitermination protein nusG (RefSeq) from Shewanella sp. ANA-3

 Score = 44.7 bits (104), Expect = 8e-10
 Identities = 36/169 (21%), Positives = 71/169 (42%), Gaps = 19/169 (11%)

Query: 3   KRWYIVHAYSNFEKKVADSIREQADQRGLTDLFEQILVPTEKVVEVRRGRKVDTERKFFP 62
           K WY+++     E +   ++  Q  +  L  + E+         + +RG+K       FP
Sbjct: 2   KAWYLLYCKPRSEARAQQNLALQNLETYLPMVSEE---------KSQRGQKRICRVPLFP 52

Query: 63  GYVLVKMDLTDEAFHLIKNTPKVTGFLGADNKPMPISESEAMRILQQVQEGIERPKPSI- 121
            Y+ +  D +  +   + +T  V+  +    K  PI +    RI+  ++     P  ++ 
Sbjct: 53  NYLFINFDPSQTSVKQVNSTRGVSRIVNCQEKMTPIDD----RIIHAIRMKELTPSQAVL 108

Query: 122 ----SYEVGETVKVSDGPFASFNGIVEEVDDSRSRLKVAVSIFGRATPV 166
                 + GE ++  DGPF    GI +E   ++ R  V  +I G++  V
Sbjct: 109 DHELELKTGEKIRFKDGPFVDLEGIFQEKCPNK-RCHVLFNIMGQSKVV 156