Pairwise Alignments

Query, 181 a.a., ECF RNA polymerase sigma factor SigF from Xanthobacter sp. DMC5

Subject, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

 Score = 52.4 bits (124), Expect = 5e-12
 Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 17/185 (9%)

Query: 8   WAQLMRSALAGDGAAYEQLLRDLAPALRTVVQRRLVRLGAPTAETEDVVQETLLAVHLKR 67
           W + M    + D  A+  +    +P L+  V + +   G+     E +VQET+  V  K 
Sbjct: 14  WLECMEKVKSRDTQAFALVFSYYSPKLKQFVMKHV---GSEQVALE-LVQETMSTVWQKA 69

Query: 68  HTWRTE-DPLGPWLWTIARNKMVDHLRR-RGRRVEVPVEDF--AEFLP-------APEER 116
             +  +   L  W++TIARN   D LRR +GR   V  +D    ++ P       APE+ 
Sbjct: 70  SLFDGQKSSLATWIYTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHYAPEQ- 128

Query: 117 PDTGAMEVEQHLALLPQKQQAVLRSVAVEGASVAETAERMRMTPGAVRVALHRAFASLSA 176
            D    +V + L  LP+ QQ V+++V +E     + A+ + +  G V+  L  A   L  
Sbjct: 129 -DLLKEQVMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRL 187

Query: 177 RLREE 181
            +  E
Sbjct: 188 SMDAE 192