Pairwise Alignments

Query, 770 a.a., Sensor histidine kinase RcsC from Xanthobacter sp. DMC5

Subject, 1239 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  169 bits (427), Expect = 1e-45
 Identities = 127/397 (31%), Positives = 205/397 (51%), Gaps = 42/397 (10%)

Query: 368 RLRDAIESISEAFVLWDSQNRLVLCNSKFQSLHELPDETIVAGTPFDTIASVGRHPVTRT 427
           R R+ +E+   AFVL D    +V+ N + + L     + ++ G P + +         R 
Sbjct: 468 RFRNVVEASPNAFVLVDVHGDIVMVNRQTEVLFGYTRQELL-GQPVEQLLPEALREAHRG 526

Query: 428 PLKPEDKPEEGSRAFEAQLSNGRWLKIAERRTKDGGYVSVGTDITTMKRHEERLMDNEKR 487
             +   +  E  R     + + R L    R   DG  + V   ++ ++  +E+L+     
Sbjct: 527 LRQGYTEHPEPRR-----MGSNRELFGLHR---DGSALPVEIGLSPLRSGDEQLVQ---- 574

Query: 488 LMALVADL---RKSQQTLEHQAQQLAELAEKYSEERNKAEDANRAKSEFLANMSHELRTP 544
             A++ D+   + +++ L  QA QLA               ANR KSEFLANMSHELRTP
Sbjct: 575 --AVIIDISHRKAAERRLREQADQLAV--------------ANRYKSEFLANMSHELRTP 618

Query: 545 LNAIIGFSEIMESGMFGPLGSAKYAEYCSDIKGSGTYLLDVINDILDMSKIEAGRMQLEV 604
           LN+I+  S+ +     G L   K   +   I  +G  LL +IND+LD++KIE+G MQL++
Sbjct: 619 LNSILILSDQLRQNGAGNLNE-KQVRHADIIHRAGHELLQLINDVLDLAKIESGHMQLKL 677

Query: 605 EDVALGEIIADAMRVTAVNGDEKGVAMTMEAADNL--VIKGDRRALKQILLNLLSNAVKF 662
           E + L E++ +         ++KG+ + +E   ++   +  DR  L+QIL NLL+NA+KF
Sbjct: 678 EPLNLREMLTEQQTSLGPMAEQKGLLLKIEVDADVPVTLNSDRARLQQILRNLLTNALKF 737

Query: 663 TPEGGRIAVKARV------NGAAAVIAIEDTGIGIAKGALARIGRPFEQVESQFTKTHKG 716
           T E G + + A        +G    + + D+GIGIAK    RI + F+Q++   ++ + G
Sbjct: 738 T-EQGEVELLASCRSAEDGSGQTLQLQVRDSGIGIAKDQHERIFQAFQQIDGSISRHYGG 796

Query: 717 SGLGLAIAKSLVELHGGAMRIRSIEGSGTTVFVRLPV 753
           +GLGLAI + LVE+ GG + + S  G G T  V LP+
Sbjct: 797 TGLGLAITRQLVEVLGGQVTVESELGQGATFTVVLPI 833