Pairwise Alignments

Query, 1043 a.a., Multidrug resistance protein MdtC from Xanthobacter sp. DMC5

Subject, 1034 a.a., AcrB/AcrD/AcrF family protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  420 bits (1080), Expect = e-121
 Identities = 290/1016 (28%), Positives = 517/1016 (50%), Gaps = 31/1016 (3%)

Query: 9    AIRKPVPALVFFFILTALGIVHFRELPVTQMPNIDLPIVMVTVTQSGAAPSELETQVTKK 68
            ++++PV A V   +L A G+V F +LP+ + P+ID P+V +     GA+ S +E+++T+ 
Sbjct: 7    SVKRPVFASVISLLLIAFGLVAFDKLPLREYPHIDPPVVSIETNYRGASASVVESRITQL 66

Query: 69   VENAIAGISGVKHITSSISEGASVTLVEFHLETLVDRAVNDTRDAITKIRMDLPRSIDEP 128
            VE+ ++G+ G++HI+SS S+G S   +EF++   ++ A ND RD ++ +  +LP   D P
Sbjct: 67   VEDRVSGVEGIRHISSSSSDGRSSVTLEFNINRDIEAAANDIRDRVSSMLNNLPEEADPP 126

Query: 129  QIQRIDIEGLPIVTYAVSAPNMTTEQVSWFIDDTLARALQGVRGVAQVKRQGGVDREIRI 188
            +I++ +     I+   + + +M T +++ + +  LA     V GVA ++  GG    +RI
Sbjct: 127  EIRKANGGDEVIMWLNLVSDSMNTLELTDYANRYLADRFSAVDGVAMLRLGGGKVYALRI 186

Query: 189  SLNPDRLMSLGITAAEVSRQLRATNLDVSGGRGEVGTQEQPIRTLAGASSVEALADTRIV 248
             ++   L +  +T A++  +LR+ N+++  G  E   +   +R      + E  A+  +V
Sbjct: 187  WVDRQALAARNLTVADIESKLRSENVELPAGSVESKERHFTVRLERTFRTSEDFAN--LV 244

Query: 249  LSNGRS---VRLGELGSVVDGAAEQRVFARLDGKSVVAFGVYRAKGFSDVTVYDRVTEEL 305
            L+ G     V+LG++  +  G+ E+R+  R + +S++  GV +    + + V   V + +
Sbjct: 245  LAQGDDGYLVKLGDVAKIELGSEEERIMFRGNRESMIGLGVTKQSTANTLEVARAVNKLV 304

Query: 306  AKLRAA-HPDVTITEIDTTVRFTKSDYESAMHTLIEGAILAVIVVFLFLRDIRATLITAL 364
             ++     P + I     +  F ++  +    TLI   +L ++V++LFL  + A LI A+
Sbjct: 305  DQINPTLPPGMEIKRSYDSSVFIEASIKEVYTTLIIAMLLVILVIYLFLGSVHAMLIPAV 364

Query: 365  AIPLSILPTFWVMDMLGFSLNAVSLLAITLVTGILVDDAIVEIENIVRHMRMGKSPYRAA 424
             +P+S+L TF V+  LG+++N ++LLA+ L  G++VDDAIV +ENI R +  G+SP  A+
Sbjct: 365  TVPVSLLGTFIVLYALGYTINLLTLLAMILAIGMVVDDAIVMLENIHRRIEEGESPLVAS 424

Query: 425  IEAADEIGLAVVATTLTIAAVFAPVSFMGGIAGQYFKQFGLTVAIAVLFSLAVARLITPL 484
               A E+  AVVATTL + AVF P++F+ G  G+ FK+F +T++ AV+FS  VA  ++P+
Sbjct: 425  FLGAREVAFAVVATTLVLVAVFMPITFLEGDLGKLFKEFAVTMSAAVMFSSLVALSLSPM 484

Query: 485  VAAYFMKDTGHREGRDSLVMRG-------YVRLLAWSVRHRFATIGMGIAIFAGSIWLST 537
            + +  ++ T         V +G       Y   L  ++RH  A     IA    S+W+  
Sbjct: 485  MCSKLLRPTSESSWLVKKVDKGMDWLEHTYRSSLERTIRHPLAVSLTVIAALGLSVWMMQ 544

Query: 538  LLPSGFLPTNDISRALLSVELPPGSTIAETQKVADDIARAALSL---PEVKSVYATAGTG 594
             +P  F P  D     L V  P G++    +K  +++    + +    E+K +   A  G
Sbjct: 545  KVPQEFAPREDRGSMFLMVNGPQGASYEYIEKYMNEVEERLMPMVESGEIKRLLIRAPRG 604

Query: 595  GAGGLALSSGEVRKAQVVINLKPRSQRTIDQKTFETQFSKTLAAMPDLRVSWSQNGQNTQ 654
                   S+G    A +V+      +   D           LA +    +     G+   
Sbjct: 605  FGRSADFSNG---MAIIVLEDWSARRNAFDIMNDIRGKLSDLAGVQAFPIMRQGFGRGVG 661

Query: 655  RGFQVILSGSDGAAVAE-AAVAVEKAVRADVPELANVVSSAALDRPEIRIVPKLDEAAEL 713
            +  Q ++ G     +A+   + + KA  A+ P+L  +       +P+ R+V   D AA+L
Sbjct: 662  KPVQFVIGGPSYEELAQWRDILMAKA--AENPKLLALDHDYKETKPQFRVVIDRDRAADL 719

Query: 714  GVSVDTIAETVRIATIGDISANLAKFSAKDRQIDIRVQ---LAENARTRLSTFDALKVPT 770
            GVS+  I  T+  + +G  S  +  F     + D+ ++     +N    LS        T
Sbjct: 720  GVSISHIGRTLE-SMLG--SRLVTTFMRDGEEYDVIIEGDRAKQNTAQDLSNIYVRSDRT 776

Query: 771  ASGGAVPLSAVADVQFGKGPTALDRYDRARRVAVEADLVGDTPLGDALAKVKALPAAQNL 830
                 +PLS +  VQ     ++L+RY+R R + +EA+L     LG+AL  +        L
Sbjct: 777  RE--LIPLSNLVHVQEFADASSLNRYNRMRAITIEANLADGYSLGEALDYLND-TVRTYL 833

Query: 831  PAGVTLKEAGDAEIMAEVFSGFAMAMAAGLMLVLAVLVLLFHDILQPITILVSLPLSVGG 890
            PA   +   G +    E  +         L +V  VL   F   + P  I++++PL+  G
Sbjct: 834  PAEAVVSYKGQSLDYQESGNSMYFVFVLALGVVFLVLAAQFESYIHPAVIMLTVPLATLG 893

Query: 891  AFIALLITGNSVSMPVVIGFLMLMGIVTKNAILLVDFAIESMHQGVDRFTALIEAGRKRA 950
            A I L +TG ++++   IG +ML+G+  KN IL+V+FA +   +GVD   AL+ A  +R 
Sbjct: 894  ALIGLWLTGQTINIYSQIGIIMLVGLAAKNGILIVEFANQLRDRGVDFIEALLTASTQRL 953

Query: 951  QPIVMTTIAMVAGMVPSAMALGEGGSFRAPMAIAVIGGLITSTVLSLVFVPAVFTV 1006
            +PI+MT I   AG VP  MA G G   R  + + V+ G+I +T+ +L+ +P  + +
Sbjct: 954  RPILMTGITTAAGAVPLVMAQGAGAETRFVIGVVVLSGIILATIFTLMVIPTAYAL 1009