Pairwise Alignments

Query, 445 a.a., Isopentenyl-diphosphate delta-isomerase from Xanthobacter sp. DMC5

Subject, 516 a.a., ferredoxin-dependent glutamate synthase (RefSeq) from Shewanella loihica PV-4

 Score =  221 bits (562), Expect = 6e-62
 Identities = 138/397 (34%), Positives = 209/397 (52%), Gaps = 19/397 (4%)

Query: 40  GGTKRKLPHFDDLLFLGASMSRYPLEGYREKCGTEVTLGTRFAKKPITLKTPVTIAGMSF 99
           G  + +LP +D++  + A M+  PL    E   TE+ +G   A+KP+ LK P+ ++ MSF
Sbjct: 137 GVPRYQLPSWDEIQIMTAQMANKPLFE-EEAVDTELIIGPE-ARKPLRLKIPLLVSDMSF 194

Query: 100 GALSAQAKEALGRGASTVGTSTTTGDGGMTPEERGQSKTLVYQYLPSRYGMNPVDLRKAD 159
           GALS +AK AL +GA   GT   +G+GGM PEE+  +    Y+   +++G     + K  
Sbjct: 195 GALSEEAKVALAKGAELAGTGICSGEGGMLPEEQAANSRYFYELASAQFGYQEALMAKIQ 254

Query: 160 AIEIVIGQGAKPGGGGMLLGQKISDRVAAMRTLPKGIDQRSACRHPDWTGPDDLEIKIEE 219
           A     GQGAK G GG L G K   ++A +R +P G D  S  R  +     D +   + 
Sbjct: 255 AFHFKGGQGAKTGTGGHLPGSKNQGKIAQIRGIPAGQDAISPPRFRELNSVADFKRFADR 314

Query: 220 LREITDWEKPIYVKVGASRPYYDTALAVKAGADVVVLDGMQGGTAATQDVFIEHVGIPIL 279
           +RE++    PI  K+ A+    D   A+ A AD ++LDG  GGT A   +F +H+ +P +
Sbjct: 315 VRELSG-GVPIGFKLSANHIERDIQFALDASADYIILDGRGGGTGAAPQIFRDHISVPTI 373

Query: 280 AAIRPAVQALQDLDMHRKVQLIVSGGIRTGADVAKALALGADAVAIGTAALVALGDNDPQ 339
            A+  A + L       +V LI++GG+R   D  KA+ALGAD VA+  +A+         
Sbjct: 374 PALARARRYLDQQGASGRVTLIITGGLRLPMDFVKAMALGADGVALANSAM--------- 424

Query: 340 WEDEYQALGSTAGAYDDWHEGRDPAGITTQDPELSKRLDPVKAGRRLANYLSVMTLEAQT 399
                QA+G  A      +    PAGI TQ+ +L +RL+  K+ ++LAN+L   T   Q 
Sbjct: 425 -----QAIGCVAARI--CNTNNCPAGIATQNADLRQRLNIDKSAQQLANFLGASTELMQV 477

Query: 400 IARACGKSHLHNLEPEDLVALTVEAAAMAGVPLAGTT 436
           +ARACG   L +   +DL     E A ++G+  AG T
Sbjct: 478 MARACGHHRLQDFTLDDLATWHSEMARLSGISYAGVT 514