Pairwise Alignments

Query, 296 a.a., High-affinity branched-chain amino acid transport system permease protein LivH from Xanthobacter sp. DMC5

Subject, 313 a.a., integral membrane protein of the ABC-type Nat permease for neutral amino acids NatD from Synechococcus elongatus PCC 7942

 Score =  130 bits (326), Expect = 5e-35
 Identities = 101/326 (30%), Positives = 160/326 (49%), Gaps = 51/326 (15%)

Query: 7   FLEVVVGGLLSGVMYTLVALGFVLIFKASGVFNFAQGAM-VLFAALTFV----------- 54
           +L+ ++ GL  G +Y L ALG+ L+F   GV NFA GA+  L A LT+            
Sbjct: 3   WLQPLINGLAIGGVYALFALGYTLVFSILGVINFAHGAVFTLGAYLTYALVGGRFSFNGL 62

Query: 55  ---GFLEFGLPMWAAFLLALAAMLVLAVAIERTVLRPLVGQ--DHMILFMATIGLSIFLE 109
                L F LP   A LL        ++ IE+   RPL  +  D ++  ++++G+++F+ 
Sbjct: 63  LANAALPFSLPFALALLLGSLLAGGASLLIEQVAFRPLRRRQADPLLTLISSLGVAVFIV 122

Query: 110 GFAQLIWGTKV------------RGLDLGISDEPIEIGGILISQFDLSAAAMAAVLVAVL 157
              Q++ G ++              ++LG SD PI+I  + I  F      +A  + ++L
Sbjct: 123 NLIQILVGAEIYTFPSNIYGDLPSAINLGSSDRPIQIRTVQIILF-----VVAIAMFSLL 177

Query: 158 SAFFSYTKVGRALRAVADDTQAAQVAGVP-------LGFIWAVVWGAAGFIALVAGLVWG 210
           +   + T+VG AL+AVA+D   A + G+          F+  V+ G AG +   +  + G
Sbjct: 178 TWLINGTRVGHALKAVAEDATTASLLGIDPDRYIRLTFFLSGVLGGLAGTLVGTSVSITG 237

Query: 211 ARLGVQFALTLVALKALPVMILGGFNSIAGAIVAGLVIGVSEKLAEIYLGPFVGGGIENW 270
              G+ +      LK L VM+LGG  +I G I  GL++G    LAE ++ P    G  + 
Sbjct: 238 PYFGIAY-----GLKGLSVMVLGGLGNIPGTIAGGLLLG----LAEAWVPP-QWSGYRDA 287

Query: 271 FPYALAIAVLLIRPAGLFGAARIARV 296
             +AL  A+LLIRP GLF  AR  +V
Sbjct: 288 VAFALLFAMLLIRPQGLFSRARTEKV 313