Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase DeaD from Xanthobacter sp. DMC5

Subject, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  264 bits (675), Expect = 8e-75
 Identities = 199/632 (31%), Positives = 299/632 (47%), Gaps = 43/632 (6%)

Query: 4   LTTNPALAQALAERDYDNPTPVQLAVLAPEASGRDLLVSAQTGSGKTVAYGLAMAETLLG 63
           L  N A+  AL E  + +PTP+Q A +     GRD L  AQTG+GKT A+ L +   L  
Sbjct: 31  LALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNL 90

Query: 64  AEERFEFASVPQALVVAPTRELALQVQREFAWL-YAATGARIVSCVGGMDPRQEQRLLAR 122
           ++ +      PQA+V+APTRELA+QV  E   L     G +++   GG     + R L  
Sbjct: 91  SQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKS 144

Query: 123 GAHIVVGTPGRLRDHLERGRLDLSALRVAVLDEADEMLDLGFREDLEFILDATPPERRSL 182
           GAHIVVGTPGR++D + R RL L      +LDEADEML +GF +D+ +I++  P   + +
Sbjct: 145 GAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRV 204

Query: 183 LFSATMPRGIIALAKRYQRDALRIEVAGAEGGHADIEYRTMRVAPTEVEHAVVNVLRYYD 242
           LFSATMP  +  + +R+ R+   ++VAG+    A +E +   V   E + A+  +L   +
Sbjct: 205 LFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEE 264

Query: 243 TPSAIVFCNTRETVRRLHAMLQERQFSAVALSGELSQNERNHALQALRDGRARVCVATDV 302
           T ++IVF  TR+   RL   L  R F A AL G++ Q+ R   +  ++ G   + VATDV
Sbjct: 265 TDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDV 324

Query: 303 AARGIDLPNLGLVIHADLPNDGESLQHRSGRTGRAGRKGVSVLLVPPFRRRRAEDLMRAI 362
            ARG+D+P +  V + D+P D ES  HR GRTGRAGRKG ++LLV   + R    + R  
Sbjct: 325 VARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVT 384

Query: 363 GIRPSWSGPPTSEDIRKLDHERMLRDALITDEPSEEDSSAGLALLAAHSPE----HLAAA 418
                    P  + + +    ++ ++     E S  +  A L      S E     LAA 
Sbjct: 385 RSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASLEIDATTLAAI 444

Query: 419 LARLYRAGLPAPEEVADP---------------GEPRAARDRAAGRDFDGGSGAGSVW-- 461
           L +  +   P     ADP                + R   DR A R+F G       W  
Sbjct: 445 LLKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDGDRPARREFGGRDQENHDWDT 504

Query: 462 FRLNVGRRNNADPKWLLPLICRRGNVTRKEIGVIRIFDEETAFEVSLAAADRFIKGARK- 520
           ++L VGR      K ++  +     +T+  IG I++    T  ++  A ++      RK 
Sbjct: 505 YQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSNDVSSKLRKL 564

Query: 521 -----------ADGDDVIIEPMPGQPAEQSKRPGRGRPQGGLPASEKPARGRNFRNGPAP 569
                       D DD        +     +R G  RP+G      +  R      G   
Sbjct: 565 RIRQKEVGAVVCDFDDFRESRGGARREGGPRREGGRRPEGNREGGFRGGREGGREGG--R 622

Query: 570 GKPADGRAER-GKTAYEKPREARPAGQGKGDR 600
           G+  +GR  R G+  +E+ R    +G  +G+R
Sbjct: 623 GRGGEGRPFREGERRFERNRSGESSGSYRGER 654