Pairwise Alignments

Query, 411 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score = 52.8 bits (125), Expect = 2e-11
 Identities = 66/279 (23%), Positives = 113/279 (40%), Gaps = 29/279 (10%)

Query: 4   LTKRAVDAAEAGAKDYVIWDDELPGFGLRVFTSGKRSYVLQYRSAGRSR--RFTIGLHGV 61
           LT R +  A+   K Y + D     F +R   S  RS+  +Y+  G+ +    + G +  
Sbjct: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVR--PSNSRSWQFRYKRPGQDKITYLSFGTYPD 62

Query: 62  WTPERARKEAKAQLGRIAQGDDP--AEERLLDRKALTVKELCDLYLADLQAGLILGKGGR 119
            +   AR++A     ++A G DP  A+E   ++KA T+ E    +    +      +G  
Sbjct: 63  MSLAEAREKALEARKQLADGIDPQLAKE---EQKAKTITEQNATFKFVAEQWKATKEGQI 119

Query: 120 PKKPGTIASDLGRIHRHIVPLLGSRRVRDLTKADITKAMKDIMAGKTRVTVKTKNLRGKS 179
            +K  T+  +  ++  +  P LGS  V  LT      A++ I +     TVK        
Sbjct: 120 KEK--TLEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVK-------- 169

Query: 180 IVKGGAGTATRTIGLFGGILTYAVEAGIIETNPAHGVRRPKDNVRARRLSEAEYRVLGDL 239
                     RT  L   I+ YAV +G+I  NP  G+R      +   +   +   + DL
Sbjct: 170 ----------RTAQLMNEIMNYAVNSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDL 219

Query: 240 LKAAAEKESYRMSVEIIRQIALTGCRRMEMISLQWDEAD 278
           ++  A      ++  +I     T  R  E    +W+E D
Sbjct: 220 IRTVATANIQHVTRFLIEWQLHTMVRPNEASGARWEEID 258