Pairwise Alignments

Query, 262 a.a., Inner membrane ABC transporter permease protein YdcV from Xanthobacter sp. DMC5

Subject, 275 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Shewanella loihica PV-4

 Score =  105 bits (261), Expect = 1e-27
 Identities = 65/232 (28%), Positives = 117/232 (50%), Gaps = 10/232 (4%)

Query: 22  VLFLMGPIIIAGIVAFSSGDRLEFPIPGFSLRWFVVALQTPQYIEGLTVSVIIGLGNALL 81
           + FL  P+ I    +F+   +L     GFS +W+    +  Q ++ +  S+ +    + +
Sbjct: 19  MFFLYAPMFILVFYSFNES-KLVTVWGGFSAKWYGELFRDDQILDAVATSLKVAFFASTM 77

Query: 82  ATIAGTGAAIALHRY-RFRGRSAVQALVMLPIAMPAIVLGLGLLFT------LAVYDMRP 134
           A I GT AA  + R+ R  G+  +  ++  P+ MP ++ GL LL        L  +    
Sbjct: 78  AVILGTMAAFVMTRFARSWGKMTLSNMITAPLVMPEVITGLSLLLLFVHMADLLGWPAER 137

Query: 135 GILAATLGHAVLGVPYVVAMVSAALANHDGSLERASMNLGVGPVGTFFRVTLPMIRGGVI 194
           G+L   + H+     YV  +VS+ L   D S+E A+ +LG  P+ TFF +T+PMI   +I
Sbjct: 138 GMLTVWIAHSTFCAAYVAVVVSSRLRELDMSIEEAAQDLGATPLKTFFHITVPMISPALI 197

Query: 195 AGAVSAFLISFDNFSLSLFIT--RGDTLPLRLMQQLLAYADPSVAAISTLLV 244
           AG + +F +S D+  ++ F +     TLP+ +   +     P + A++TL++
Sbjct: 198 AGWLLSFSLSLDDLVIASFASGPGATTLPMVVFSSVRMGVSPKINALATLII 249