Pairwise Alignments

Query, 450 a.a., C4-dicarboxylate TRAP transporter large permease protein DctM from Xanthobacter sp. DMC5

Subject, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  207 bits (527), Expect = 5e-58
 Identities = 129/443 (29%), Positives = 222/443 (50%), Gaps = 33/443 (7%)

Query: 5   LVGLLYGGATLGTMFLGMPIAFALGAVAVLF--------MVGFMPAASLDTVTQNVYEEM 56
           ++G++     L  + LG P+AF  G +A++F        M  FMP          +   M
Sbjct: 1   MIGIVMFFVALFALLLGFPVAFTFGGIALIFGLWAEGIEMFAFMP--------YRIQSIM 52

Query: 57  ASITLLSIPLFILKGAAIGKSRAGQDLYSALHAWMHKIPGGLGIANVFACALFAAMAGSS 116
            +  L+++PLF+  G  + K++  + L  ++      I GG+ I+ V    L AA  G  
Sbjct: 53  ENTVLMAVPLFVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVV 112

Query: 117 PATCSAIGSAGIPEMRKRGYSGAFAAGLIAAGGTLGILLPPSITMILYAVAAEQSLGRLF 176
            A+  A+G   +P M K  Y    A G I A GTLG ++PPSI +IL        +G LF
Sbjct: 113 GASVVAMGLISLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLGVPVGDLF 172

Query: 177 LAGLGPGLLLVMLFAGYAMVRFRQEYAAAKKAYAETGARSALLHEENLTLRDR---FAAL 233
            A L PGL+LV  +  Y ++            YA+   ++A+  E +  L  R     AL
Sbjct: 173 QAALWPGLMLVAAYIIYILI------------YAKLNPQAAMPIEPDADLSRRQEVVKAL 220

Query: 234 PRVLPFVVLLTGVMVALYGGYATPSETAGLGGVLALALIALIYGVWTPKDLSPILTSTIR 293
             V+P + L+  V+ +++ G ATP+E+A LGG  A+ L+AL YG ++   +      T++
Sbjct: 221 KAVIPPLALIVVVLGSIFAGVATPTESAALGGAGAI-LLALAYGQFSWSMVYDASKETVK 279

Query: 294 ESTMLMMIIGMSLLYSYVMSYLHISQAAAQAIVALNLSKWLLLATILVLVVVLGFFLPPV 353
            + M+  I+  +  +S   +Y    +   + ++ L   KW  L   ++++++LGFF+  V
Sbjct: 280 VTAMVFAILLGATAFSMAFTYTGGDELVEEWMMNLPGDKWGFLIVTMLVILILGFFIDFV 339

Query: 354 SIILMTAPIILPPLKAAGFDLIWFGVVMTIVMEMGLIHPPVGLNIFVIKNIAP-DIPLKD 412
            I  +  PI+ P       D+ WF +++ + ++   + PP G ++F +K +AP  +   D
Sbjct: 340 EICFIIVPILAPVAVLMDVDMTWFAILIAMNLQTSFLTPPFGFSLFYLKGVAPKSVTTMD 399

Query: 413 VIWGTVPFVLLMLLAVILLCLFP 435
           +  G VPF+L+ +L +I L +FP
Sbjct: 400 IYRGVVPFILIQILVLISLMVFP 422