Pairwise Alignments

Query, 572 a.a., 30S ribosomal protein S1 from Xanthobacter sp. DMC5

Subject, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

 Score = 69.3 bits (168), Expect = 5e-16
 Identities = 36/85 (42%), Positives = 58/85 (68%), Gaps = 2/85 (2%)

Query: 183 TRAEQRHELVQNLEEGQAIDGVVKNITDYGAFVDLG-GIDGLLHVTDIAWRRVNHPTEVL 241
           T AE  HE V +LE G  ++GVV N+ ++GAFVD+G   DGL+H++ +  R ++ P EV+
Sbjct: 637 TFAEGIHE-VSDLEVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVV 695

Query: 242 NIGQTVKVKIIKINHETHRISLGMK 266
             G  VKVK+++++ +  RI+L M+
Sbjct: 696 KAGDIVKVKVMEVDVQRKRIALSMR 720



 Score = 49.7 bits (117), Expect = 4e-10
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 370 GAVVEGEVKNKTEFGLFLGLDGDVDGMVHLSDLDWNRPGEQVIDEYRKGDMVKAVVLDVD 429
           G V+EG V N   FG F+ +    DG+VH+S L  +R      +  + GD+VK  V++VD
Sbjct: 651 GMVLEGVVSNVANFGAFVDIGVHQDGLVHISALT-DRFISDPREVVKAGDIVKVKVMEVD 709

Query: 430 VEKERISLGIK 440
           V+++RI+L ++
Sbjct: 710 VQRKRIALSMR 720



 Score = 46.6 bits (109), Expect = 4e-09
 Identities = 22/67 (32%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 287 KGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVEVQVLEVDSAKR 346
           +G V+N+ ++GAFV++    +GL+H+S ++  +    P ++V     V+V+V+EVD  ++
Sbjct: 655 EGVVSNVANFGAFVDIGVHQDGLVHISALT-DRFISDPREVVKAGDIVKVKVMEVDVQRK 713

Query: 347 RISLGLK 353
           RI+L ++
Sbjct: 714 RIALSMR 720



 Score = 29.3 bits (64), Expect = 6e-04
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 22  ADTNEGSVVKGIVVAIEKDLAIIDIGLKTEGRVALR----EFAGPGRENAIKVGDEVEVY 77
           +D   G V++G+V  +    A +DIG+  +G V +      F    RE  +K GD V+V 
Sbjct: 646 SDLEVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPRE-VVKAGDIVKVK 704

Query: 78  LERVE 82
           +  V+
Sbjct: 705 VMEVD 709