Pairwise Alignments

Query, 572 a.a., 30S ribosomal protein S1 from Xanthobacter sp. DMC5

Subject, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

 Score = 70.9 bits (172), Expect = 2e-16
 Identities = 31/77 (40%), Positives = 55/77 (71%), Gaps = 1/77 (1%)

Query: 192 VQNLEEGQAIDGVVKNITDYGAFVDLG-GIDGLLHVTDIAWRRVNHPTEVLNIGQTVKVK 250
           +++L+EG  + G V+NI D+GAF+D+G   DGL H+++IA R + HP +V+++G  V V 
Sbjct: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVM 694

Query: 251 IIKINHETHRISLGMKQ 267
           ++ I+ +  R+SL +K+
Sbjct: 695 VMDIDFDKKRVSLSIKR 711



 Score = 55.1 bits (131), Expect = 1e-11
 Identities = 26/68 (38%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 287 KGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVEVQVLEVDSAKR 346
           KG V NI D+GAF+++    +GL H+SE++  +   HP  ++S    V+V V+++D  K+
Sbjct: 645 KGTVRNIVDFGAFIDIGVHHDGLAHISEIA-DRFIKHPLDVISVGDIVDVMVMDIDFDKK 703

Query: 347 RISLGLKQ 354
           R+SL +K+
Sbjct: 704 RVSLSIKR 711



 Score = 53.5 bits (127), Expect = 3e-11
 Identities = 26/77 (33%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 365 EKYAPGAVVEGEVKNKTEFGLFLGLDGDVDGMVHLSDLDWNRPGEQVIDEYRKGDMVKAV 424
           E    G +++G V+N  +FG F+ +    DG+ H+S++  +R  +  +D    GD+V  +
Sbjct: 636 EDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIA-DRFIKHPLDVISVGDIVDVM 694

Query: 425 VLDVDVEKERISLGIKQ 441
           V+D+D +K+R+SL IK+
Sbjct: 695 VMDIDFDKKRVSLSIKR 711



 Score = 30.4 bits (67), Expect = 3e-04
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 23  DTNEGSVVKGIVVAIEKDLAIIDIGLKTEGRVALREFAGPGRE---NAIKVGDEVEVYLE 79
           D  EG ++KG V  I    A IDIG+  +G   + E A    +   + I VGD V+V + 
Sbjct: 637 DLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVM 696

Query: 80  RVENAMGEAVLSRDKAR 96
            ++       LS  +A+
Sbjct: 697 DIDFDKKRVSLSIKRAK 713



 Score = 27.7 bits (60), Expect = 0.002
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 452 EVKKGAVVTCEVTDVKDGGIEVKLTGTDLSAFIKRSELARDRNDQRP-ERFSVGDKLDAR 510
           ++K+G ++   V ++ D G  + + G         SE+A DR  + P +  SVGD +D  
Sbjct: 637 DLKEGMILKGTVRNIVDFGAFIDI-GVHHDGLAHISEIA-DRFIKHPLDVISVGDIVDVM 694

Query: 511 VTLFDRKARKVQVSIK 526
           V   D   ++V +SIK
Sbjct: 695 VMDIDFDKKRVSLSIK 710