Pairwise Alignments

Query, 863 a.a., Multifunctional non-homologous end joining protein LigD from Xanthobacter sp. DMC5

Subject, 636 a.a., ATP-dependent DNA ligase from Sinorhizobium meliloti 1021

 Score =  377 bits (969), Expect = e-109
 Identities = 225/594 (37%), Positives = 321/594 (54%), Gaps = 26/594 (4%)

Query: 250 GAKAAPLPAFIPPALATLATKAPAGTRYLHEIKFDGYRIQARVENGKVRLLTRTGLDWTD 309
           GA  +  PAFI P   TL  + P G  ++HEIK DGYR Q  +  GK+ L TRTGLDWT 
Sbjct: 49  GATQSAFPAFIEPCHPTLKKRPPDGADWVHEIKLDGYRAQLHINGGKITLYTRTGLDWTT 108

Query: 310 RFGTGILAELNRFPIRTALFDGEIVVESGNGATDFSALQADLSEGRSDRFVYYVFDLLHL 369
            F   I            + DGE+ V    G  DF AL+ +L++  S    +  FDLLHL
Sbjct: 109 EF-EAIATAAEDLAGHDVVMDGEVTVFGKTGLPDFQALRRELAKRSSPNLTFQAFDLLHL 167

Query: 370 DGHDLTPLPLKDRKDLLEKLVGQDGDKVRYSAHFE-DDGALVLRHACRLSLEGVVSKLKT 428
           DG+DL  +PL +RK +L +L+G     + Y  + E ++G  V RHAC++ LEG+VSK K 
Sbjct: 168 DGYDLRRVPLIERKRVLRELIGDAAGTIAYVDYLELEEGEPVYRHACKMGLEGIVSKRKD 227

Query: 429 APYHSGRTRDWIKSKCLERQEFVVGGFVPSTTSRTA-IGSLVLGVFEDGKLRYVGRVGTG 487
           APY SGR   W K+KC +R  F +  FV    ++   I SL LG +E  +L Y G+  TG
Sbjct: 228 APYRSGRQEIWTKTKCTKRDAFPIVAFVEKLGAQPRRIASLYLGRWEGDRLVYAGKAQTG 287

Query: 488 FTQRVAADLHKLLVSEKTDVCPFSGKLTAEEARGVSFVEPLHVAEVEFGAWTGDGHLRHA 547
           +T   A ++ + L        P S  +   +A   ++VEP   AE+++G  T DG LR  
Sbjct: 288 YTLTAAREVRERLNPLIIGKSPLSHPINKPKA---TWVEPQVYAEIDYGGVTDDGLLREP 344

Query: 548 AFRGLREDKPATEIVRESSSEPKASDPPA----PKRRVRLTHPDRVYWPDVGLTKEGLAD 603
            F+GL++       V  ++ +PK +  PA    P   +    P+ V       +KE LA+
Sbjct: 345 VFKGLQD-------VSRAAGKPKPTTAPASIRVPPANILQLLPEAVV-----PSKEELAN 392

Query: 604 YYAQVWRFMAPFVTGRPLALVRCPEGIDGQRFFQKHPWKGLDKNILQVPDPKAKDEAPY- 662
           Y+ +V      F+ GRPL LVR    I G  F+ K P   +   + Q+   K +  A   
Sbjct: 393 YWTRVADRALHFLGGRPLKLVR---HIHGTTFYHKGPLPPIPPEVHQLRIEKREGGAGVR 449

Query: 663 LAIRDLDGLTALVQGAALEIHPFGATLADWERPDILTMDLDPGDDVPWGDVISAAEEVRE 722
           L + DL GL  LV+  A+E+HP+ A++ D E  D L  DLDPG+ V W  V+  A  +RE
Sbjct: 450 LWVDDLAGLLGLVEIGAVELHPWAASVDDIEHADALIFDLDPGEGVSWAFVVETALRLRE 509

Query: 723 RIEKKGLSAFLKTSGGKGLHICAPLTPKADWARLKAFTKAMAEEMASDSPDRFVATITKS 782
            +E +G   + K +GGKG+H+ +PL  K       A+ K +A++ AS  PDR+V +   S
Sbjct: 510 FLEAEGFKTWPKLTGGKGVHLMSPLPAKMTHNAAHAYAKRLAQQFASTDPDRYVTSAQLS 569

Query: 783 QRKGRILVDYLRNQRGATAVAPYSTRARPGAPVSMPLAWDELGEAIGPQHFNVG 836
           +R G++ +DYLRN RG TAV  YS RAR G PV+ P+ W ++   I P  F +G
Sbjct: 570 RRPGKLFLDYLRNGRGTTAVGTYSPRARSGFPVAAPVTWRDIERGIKPDAFTIG 623