Pairwise Alignments

Query, 863 a.a., Multifunctional non-homologous end joining protein LigD from Xanthobacter sp. DMC5

Subject, 573 a.a., ATP-dependent DNA ligase from Methanococcus maripaludis S2

 Score = 56.6 bits (135), Expect = 4e-12
 Identities = 75/279 (26%), Positives = 120/279 (43%), Gaps = 44/279 (15%)

Query: 255 PLPAFIPPAL--ATLATKAPAGTRYLHEIKFDGYRIQARVENGKVRLLTRTGLDWTDRFG 312
           P+ A + P++  A + TK P       E K+DG R+Q    NG V++ +R  L+      
Sbjct: 228 PMLAQLTPSIEDAMIETKMPQ-----FETKYDGARVQVHKSNGDVKIYSRR-LENITNSV 281

Query: 313 TGILAELNRFPIRTALFDGEIV---VESGNGATDFSALQADLSEGRSDRFV------YYV 363
             ++ E+ +  I   + +GE V   ++SG        L+    +   D+         Y 
Sbjct: 282 PELVEEIKKLDIDNIILEGECVAMDLDSGKPRPFQDILRRFRRKYNIDKMAEKIALRIYF 341

Query: 364 FDLLHLDGHDLTPLPLKDRKDLLEKLVGQD--------------GDKVRYSAHFEDDGAL 409
           FD+L+ +   L   PLK R+++LEKL G +                K+ +S+   + G  
Sbjct: 342 FDVLYYN-RGLIDTPLKTRREILEKLFGTNNWDSELEKIKKEIFSSKMLFSSFKLNSGDP 400

Query: 410 VL-----RHACRLSLEGVVSKLKTAPYHSG-RTRDWIKSK-CLERQEFVV-GGFVPSTTS 461
            L       +  +  EG++ K   APY  G R +   K K  LE  + VV    +     
Sbjct: 401 NLVKEFFNWSLSIGHEGIMIKNPDAPYTPGSRVKTMYKVKPTLENLDVVVTRAKIGMGKR 460

Query: 462 RTAIGSLVLGVFE-DGKLRYVGRVGTGFTQRVAADLHKL 499
           +   GS  L V + DG L  +G VG+G T+    DL KL
Sbjct: 461 KDWYGSYELSVKDNDGNLHVIGNVGSGLTE---DDLEKL 496