Pairwise Alignments

Query, 1069 a.a., multidrug efflux RND transporter permease subunit OqxB12 from Xanthobacter sp. DMC5

Subject, 1037 a.a., aminoglycoside/multidrug transporter subunit AcrD from Klebsiella michiganensis M5al

 Score =  785 bits (2027), Expect = 0.0
 Identities = 431/1039 (41%), Positives = 649/1039 (62%), Gaps = 16/1039 (1%)

Query: 3    LSRFFIDRPIFAGVLSVLIFLAGLIAMRAMPISEYPEVVPPQVVVRATYPGANPKVIAET 62
            ++ FFIDRPIFA VL++L+ L G++A+ ++P+ +YPE+ PP V + A YPGA+ + +  T
Sbjct: 1    MANFFIDRPIFAWVLAILLCLTGILAILSLPVEQYPELAPPNVRITANYPGASAQTLENT 60

Query: 63   VSTPLEESINGVEGMLYMSSQATTDGIMTLTVTFKLGTDPDKAQQLVQNRISQAEPRLPE 122
            V+  +E+++ G++ ++YMSSQ++  G  T+T++F  GTDPD+A Q VQN++  A  +LP+
Sbjct: 61   VTQVIEQNMTGLDNLMYMSSQSSGTGQATVTLSFTAGTDPDEAVQQVQNQLQSAMRKLPQ 120

Query: 123  EVRRLGVTTVKSSPDLTMVVHLISPNNRYDTTYLRNYAVLNVKDRLARIDGVGQVQLFGA 182
             V+  GVT  K+     + +  +S +   D   + +Y   N++D L+R++GVG +  +G+
Sbjct: 121  AVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGS 180

Query: 183  GDYSMRIWLDPQKVAEHGLSAADVVREIRAQNVQAAAGVVGASPGAPGLDLQLSINAQGR 242
              YSMRIWLDP K+    ++A DV   I +QN Q A G +G +P      L  +IN+Q  
Sbjct: 181  -QYSMRIWLDPAKLNSFQMTAKDVTDAISSQNAQIAVGQLGGTPSVDKQALNATINSQSL 239

Query: 243  LANEEEFANIVVKSGTNGEIVLLKDVARIELGASEYALRSLLNNTQAVAVPIFQAPGSNA 302
            L   E+F +I ++   +G  V L DVA +E+GA +Y   S  N   A  + +  A G+N 
Sbjct: 240  LQTPEQFRDITLRVNQDGSEVTLGDVATVEMGAEKYDYLSRYNRQAASGLGVKLASGANE 299

Query: 303  IRIADDVRLVMDEIKANMPEGVDYSIVYDTTQFVRASIDAVVHTLLEAVALVVLVVIVFL 362
            +  A+ V   ++E+    P G++Y + Y+TT FV+ASI  VV TLLEA+ALV LV+ +FL
Sbjct: 300  MATAERVIDRLNELSQYFPHGLEYKVAYETTSFVKASITDVVKTLLEAIALVFLVMYLFL 359

Query: 363  QTWRASIIPLLAVPVSIVGTFAVMYVFGFSINALTLFGLVLAIGIVVDDAIVVVENVERN 422
            Q +RA++IP +AVPV ++GTFAV+Y  G+SIN LT+F +VLAIG++VDDAIVVVENVER 
Sbjct: 360  QNFRATLIPTIAVPVVLMGTFAVLYACGYSINTLTMFAVVLAIGLLVDDAIVVVENVERI 419

Query: 423  I-EGGLSPREATYKAMREVSGPIIAIALVLIAVFVPLAFITGLTGQFYKQFALTIAISTV 481
            + E GLSPREAT K+M ++ G ++ IA+VL AVFVP+AF  G TG  Y+QF++TI  + V
Sbjct: 420  MSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMV 479

Query: 482  ISAVNSLTLSPALSALLLKGHDAPKDWLTRTMDRLFGWFFRGFNKAFVRGSGAYGGIVRR 541
            +S + ++ L+PAL A LLK     +   T      FGWF R FN    R +  Y   V +
Sbjct: 480  LSVLVAMILTPALCATLLKPVHKGE---THGQRGFFGWFNRTFN----RNASRYETAVGK 532

Query: 542  VIGQKVLMLGLYIVLVALTGVLFKAVPPGFVPGQDKQYLVGFAQLPDGATLDRTEEVIRK 601
            ++ + +  + +Y++L+     LF  +P  F+P +D+       QLP G+T  +T +V+++
Sbjct: 533  ILHRSLRWIMIYVLLLGGMVFLFLHLPTSFLPLEDRGMFTTSVQLPSGSTQQQTLKVVQQ 592

Query: 602  MSDIAL--KEPGVKSAIAFPGLSINGFTNSSNSGIVFVGLDEFEARRDPSLNGN-AIAMK 658
              D  L  ++  V+S  A  G    G  N  N   +FV L +++ +RDP+   + AI  +
Sbjct: 593  AEDYFLNNEKQNVESVFATIGSGPGG--NGQNVARMFVRLKDWD-QRDPTTGSSFAIIER 649

Query: 659  LNGKFAGIPDAMIAMFPPPPVQGLGTIGGFKFQIEDRAGLGYAALDEATKAFLGAARQAP 718
                F  I +A +    PP + GLG+  GF  ++ED AG G+ AL  A    L  A +  
Sbjct: 650  ATKAFNKIKEARVFASSPPAISGLGSSAGFDMELEDHAGNGHEALMAARDTLLELAAKNN 709

Query: 719  ELAGLFSSYQVNVPQLFADIDRVKARQLNVAVTDVFETMQIYLGSSYVNDFNKFGRTYTV 778
            +L  +  +   + PQL  DID+ KA+ L V++ D+ +T+Q   GSSYVNDF   GR   V
Sbjct: 710  QLTRVRHNGLDDSPQLQVDIDQRKAQALGVSIDDINDTLQTAWGSSYVNDFMDRGRVKKV 769

Query: 779  RVQADAPFRARAEDVGTLKVRSQTGEMIPLSALLKVRSSAGPERAMRYNGFLSADVNGGA 838
             VQA AP+R   +D+    VR+ +G M+P SA    R   G  R  RYNG+ + ++ G A
Sbjct: 770  YVQAAAPYRMLPDDINLWYVRNSSGTMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEA 829

Query: 839  APGFSSGEAQQAVERIAKETLPKGFSFEWTELTYQDILAGNSAVFVFPLAIFLVFLVLAA 898
            APG S+G A   +E +A++ LP GF  EWT ++YQ+ L+G  A  ++ +++ +VFL LAA
Sbjct: 830  APGVSTGTAMTLMEELAQQ-LPNGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLAA 888

Query: 899  QYESLMLPLAIIMIVPTGLFAAMTGVWLAGGDNNVFTQIGLVVLVGLSAKNAILIVEFAR 958
             YES  +P +++++VP G+  A+   W+ G +N+V+ Q+GL+ ++GLSAKNAILIVEFA 
Sbjct: 889  LYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFAN 948

Query: 959  ELEFEGRTPVQAAIEASRLRLRPILMTSLAFIMGVVPLVTSIGAGAEMRQAMGTAVFAGM 1018
            EL  +G   + A + A R RLRPILMTSLAFI GV+P+ TS GAG+  + A+GT V  GM
Sbjct: 949  ELNQKGEDLLTATLSACRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGM 1008

Query: 1019 IGVTVFGIFLTPVFYVMLR 1037
            I  TV  IF  P+F+V++R
Sbjct: 1009 ISATVLAIFFVPLFFVLVR 1027