Pairwise Alignments

Query, 1069 a.a., multidrug efflux RND transporter permease subunit OqxB12 from Xanthobacter sp. DMC5

Subject, 1047 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  929 bits (2401), Expect = 0.0
 Identities = 485/1045 (46%), Positives = 678/1045 (64%), Gaps = 25/1045 (2%)

Query: 4    SRFFIDRPIFAGVLSVLIFLAGLIAMRAMPISEYPEVVPPQVVVRATYPGANPKVIAETV 63
            ++FFIDRPI A V+ +++ L G++++  +PIS+YPE+ PP V V+A YPG+N  V+A+TV
Sbjct: 3    AKFFIDRPILANVIGIVLILIGVVSVMLLPISQYPEITPPTVEVKAIYPGSNSLVLADTV 62

Query: 64   STPLEESINGVEGMLYMSSQATTDGIMTLTVTFKLGTDPDKAQQLVQNRISQAEPRLPEE 123
              P+E+ +NGVEGMLYMSS++  DG  TLT+TF LGT+ D A  LVQNR++ A  RLP+E
Sbjct: 63   GAPIEQEVNGVEGMLYMSSKSANDGTYTLTITFALGTNIDMATVLVQNRVNVAMARLPDE 122

Query: 124  VRRLGVTTVKSSPDLTMVVHLISPNNRYDTTYLRNYAVLNVKDRLARIDGVGQVQLFGAG 183
            V+R GVT  K S  +  VV L SP+  YD  +L N+A L ++D LARI GVG+  +FGA 
Sbjct: 123  VKRQGVTVKKKSTAILQVVTLTSPDGSYDDLFLSNFASLRIRDELARIPGVGEATVFGAA 182

Query: 184  DYSMRIWLDPQKVAEHGLSAADVVREIRAQNVQAAAGVVGASPGAPGLDLQLSINAQGRL 243
             YSMR+WLD  ++   GL+  DVV  I  QNVQ AAG +GA P     + Q ++  QGRL
Sbjct: 183  SYSMRVWLDAPRLKSMGLTTKDVVNAISEQNVQVAAGQIGAQPAPDTQNFQFTVQTQGRL 242

Query: 244  ANEEEFANIVVKSGTNG---EIVLLKDVARIELGASEYALRSLLNNTQAVAVPIFQAPGS 300
            +N EEF +I++++ T+G    +V ++DVAR+ELG   Y L +  N   A  V I+Q PG+
Sbjct: 243  SNVEEFEDIIIRTATSGPAGRVVRVRDVARVELGGQTYDLYAQKNGKPAALVIIYQLPGA 302

Query: 301  NAIRIADDVRLVMDEIKANMPEGVDYSIVYDTTQFVRASIDAVVHTLLEAVALVVLVVIV 360
            NA+ +A  V   M  +  + P+GV + + YDTT+FV A+I+ V HTL EA  LV+ V+++
Sbjct: 303  NALDVAQQVNARMKTLGNDFPQGVAWDVPYDTTRFVEAAIEQVYHTLFEAAVLVLAVILI 362

Query: 361  FLQTWRASIIPLLAVPVSIVGTFAVMYVFGFSINALTLFGLVLAIGIVVDDAIVVVENVE 420
            FLQ WRA+++P   VP++I+G F  M   GFS+N +TLFG++LAIGIVVDDAI+VVE   
Sbjct: 363  FLQDWRATLVPASVVPITILGGFMAMMGLGFSVNLVTLFGIILAIGIVVDDAIIVVEGAA 422

Query: 421  RNIEGGLSPREATYKAMREVSGPIIAIALVLIAVFVPLAFITGLTGQFYKQFALTIAIST 480
             ++E G   REAT KAM ++ GPII I LVL  VF+P +F++G+TGQ Y+QFAL IA + 
Sbjct: 423  HHMEHGDPAREATIKAMMQLFGPIIGITLVLSCVFIPASFMSGITGQLYRQFALVIASTA 482

Query: 481  VISAVNSLTLSPALSALLLK----GHDAPKDWLTRTMDRLFGWFFRGFNKAFVRGSGAYG 536
            ++SA+ + TL+PA  AL LK    G +A               F+RGFNK++      + 
Sbjct: 483  LVSALLAATLTPAQCALFLKPIVPGRNA---------------FYRGFNKSYDAVENLFV 527

Query: 537  GIVRRVIGQKVLMLGLYIVLVALTGVLFKAVPPGFVPGQDKQYLVGFAQLPDGATLDRTE 596
             I+R ++      + +++ L+  T   F ++P GF+P +D+ Y +   QLP  A+  RT 
Sbjct: 528  TILRTMVRHAKTTMLVFVGLITATFWAFTSLPTGFLPDEDQGYALVAVQLPGAASQARTR 587

Query: 597  EVIRKMSDIALKEPGVKSAIAFPGLSINGFTNSSNSGIVFVGLDEFEARRDPSLNGNAIA 656
            EV  ++  I  +  GV   I F G+SI    N+SNS  VFV   ++  R   +L    I 
Sbjct: 588  EVTTRLDAIFSETQGVADWITFGGMSILNGANTSNSATVFVMYKDWSERG--ALTQERIV 645

Query: 657  MKLNGKFAGIPDAMIAMFPPPPVQGLGTIGGFKFQIEDRAGLGYAALDEATKAFLGAARQ 716
              L  K A I + M+ +  PPP+QGLG  GGF+  ++DRA LG   L+    + + AAR 
Sbjct: 646  ADLRRKVASIQEGMVIVVTPPPIQGLGNAGGFEMMVQDRAALGAQQLETVAYSMMAAARG 705

Query: 717  APELAGLFSSYQVNVPQLFADIDRVKARQLNVAVTDVFETMQIYLGSSYVNDFNKFGRTY 776
               L  + ++Y    PQLF ++DR + +  +V + DVF TMQ YLGSSYVNDFNKFG+TY
Sbjct: 706  QSGLGNVSTTYNARTPQLFVNVDRTQVKNYDVQLNDVFSTMQSYLGSSYVNDFNKFGKTY 765

Query: 777  TVRVQADAPFRARAEDVGTLKVRSQTGEMIPLSALLKVRSSAGPERAMRYNGFLSADVNG 836
             VRVQAD+ +R  AED+G L+VR+  G M+PL A+  V+   GP+   RYN + +A + G
Sbjct: 766  QVRVQADSRYRLTAEDIGRLEVRNAQGGMVPLGAVTDVKDVVGPDVVTRYNLYPAASLIG 825

Query: 837  GAAPGFSSGEAQQAVERIAKETLPKGFSFEWTELTYQDILAGNSAVFVFPLAIFLVFLVL 896
             AAPGFSSG+A   +E +A++TLP+   FEWT + YQ+   GN A  VF  A+ LVFLVL
Sbjct: 826  AAAPGFSSGQALALMEDMARKTLPQSMGFEWTTMAYQEKATGNEAFAVFGFAVLLVFLVL 885

Query: 897  AAQYESLMLPLAIIMIVPTGLFAAMTGVWLAGGDNNVFTQIGLVVLVGLSAKNAILIVEF 956
            AAQYES   P AIIM+VP  L      V   G DNNV+TQIG+V+L+ L++KNAILIVEF
Sbjct: 886  AAQYESWSAPAAIIMVVPLALLGTSIAVATRGMDNNVYTQIGIVLLIALASKNAILIVEF 945

Query: 957  ARELEFEGRTPVQ-AAIEASRLRLRPILMTSLAFIMGVVPLVTSIGAGAEMRQAMGTAVF 1015
            AREL  +    +Q AA+E +R R RPILMTS AFI+GVVPL+T+ GAG+  ++A+GTAVF
Sbjct: 946  ARELRLQKGMSIQDAAVEGARARFRPILMTSFAFILGVVPLLTASGAGSASQRALGTAVF 1005

Query: 1016 AGMIGVTVFGIFLTPVFYVMLRGLA 1040
             GM+  T   +   PVF+ +++ L+
Sbjct: 1006 GGMLASTFLAVLFVPVFFTVIQTLS 1030