Pairwise Alignments

Query, 1004 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

 Score = 88.6 bits (218), Expect = 2e-21
 Identities = 188/806 (23%), Positives = 317/806 (39%), Gaps = 140/806 (17%)

Query: 110 NLFTVTSQLRVK-AEKTRRPDLVIHVNGIPLVVIEAKSPLNVKDKTGEAFEQIKQYEQDI 168
           NLF+VT Q+    A      D+V+ +NGIPL+ +E K+P   ++     +   KQY  D 
Sbjct: 139 NLFSVTRQVCYSNANPLEEIDMVLFINGIPLITLELKNPWTGQNAV---YHGQKQYRDDR 195

Query: 169 ----PRL-FASNAFNMVTDGALVLYGATGAPSK--YYAEWRDPWPKAEADFADPLAKG-- 219
               P L FA    +M  D   V Y  T    K  ++  +   +   + +  +P      
Sbjct: 196 DANQPLLNFARCLVHMAVDTDEV-YMTTKLAGKNTFFLPFNKGFNFGKGNPINPHGHKTA 254

Query: 220 -LWC-LLEPARLLDLLAHYIVFEKTDAGTIKKMC----RYQQFRAVNRMVARV-LEGKHR 272
            LW  +     + +++ H+I  + +    + K      RY Q   V R+V    + G  +
Sbjct: 255 YLWQEVFRKESIANIIQHFIRLDGSSKKQLDKRTLFFPRYHQMDVVRRLVDHCSVNGVGQ 314

Query: 273 QGLIWHTQGSGKSLTMVFAALKLKTHRTIASDALTN--------PNILVLTDRIDLHGQI 324
             LI H+ GSGKS ++ +AA +L     I+ D   +         +++V+TDR  L  Q+
Sbjct: 315 TYLIQHSAGSGKSNSITWAAYQLIETYPISDDLPGSRGKEMPLFDSVIVVTDRRLLDKQL 374

Query: 325 SGTFLACGLPNPTAIGSIK--DLHTLIGSGQDGLTALSTIFKFQGSTQAVANSAN--WIV 380
                           + K  +L + + +G+  +  ++TI KF      +A+ ++  + V
Sbjct: 375 RDNIKEFSEVKNIVAPAFKSSELKSALENGKKII--ITTIQKFPYIVDGIADLSDRRFAV 432

Query: 381 MVDEAHRTQ----------------EKDLGAAL-----RATLPDARFFGFTGTPV----- 414
           ++DEAH +Q                E  L  AL     R    +A +F FT TP      
Sbjct: 433 IIDEAHSSQDGHNQDKLNEAMGFVSEDVLDKALQSAKNRKMRSNASYFAFTATPKNTTLE 492

Query: 415 ---KKDDKDTYVNFGVPGEAYLDKYGIDDAVADGATVPIY--YTGRKTDWQMDEARIDIL 469
              ++    TYV F +        Y +  A+ +G  + +   YT  K+ ++++++  D  
Sbjct: 493 KFGQRQADGTYVPFHL--------YSMKQAIEEGFILDVIANYTTYKSYYEIEKSIQDN- 543

Query: 470 FDTWFAELDDDRLNEIKKRGVEIEDLVKHPRRIELIAYDIWTHFKAYARPDGFKAQIVAI 529
                 E D  +  +  +  VE        +   ++ + I             K  +V  
Sbjct: 544 -----PEFDSKKAQKRLRAYVEASQETIDTKAEIMLEHFIKHVVNGKKLKGKGKGMVVTQ 598

Query: 530 DREAVILYKRALTRVIADDLQGEGMPAEAALARADAMSACVYSINQEDHKPSEDARRQDI 589
           + E+ I Y RALTR     L   G P + A+A + +         + D     +   +D 
Sbjct: 599 NIESAIRYYRALTR----QLNKMGNPFKVAIAFSGSKEVDGIEYTEADINGFPEGDTKDY 654

Query: 590 RAALVENYLDAEAEKLAKKAFGRAGEDPQFLIVCDKLLTGFDCPIESVMYLDKPLKEHGL 649
                 NY   E +    K   +  +  + L+V +K LTGFD P    MY+DK L     
Sbjct: 655 FDV---NYKRKEPDSPIPKHVDQ--DAYRLLVVANKYLTGFDQPKLCAMYVDKKLASVLC 709

Query: 650 LQAIARTNRVSD--ARKRNGL-IVDYIGVSAHLEAALASY-------RADDVKNAMRDL- 698
           +QA++R NR +    +K   L ++D+      ++ A   +        A DV N + +L 
Sbjct: 710 VQALSRLNRSAPKYGKKTEDLFVLDFFNSVDDIKTAFDPFYTSTTLSEATDV-NVLHELK 768

Query: 699 DDL------------RSQLRAAHAAVAAMLRPVARTARDRSGWEKEF-NAFATALGSEDQ 745
           DD+                R      A  L P+   A  R   E E  N F         
Sbjct: 769 DDMDDTDVYEWFEVEEFNKRFFEGREAQDLSPIIDIAAARFNHELELENEFKV------- 821

Query: 746 WFTFKGRARAFIALY-ETLSPDPSVLDFTADLKWVASFLLFGTQRFEKRQAFDQMSYSEK 804
              FK +A+ F+ +Y +  S  P  +     L W   FL+             ++S  + 
Sbjct: 822 --DFKVKAKQFVKIYGQIASIMPYEVVQWEKLFWFLKFLI------------PKLSVEDP 867

Query: 805 IREMLDTHLDATGLS----VTVKLRH 826
            +E LD+ LD+  LS      VKL H
Sbjct: 868 DKEALDSLLDSVDLSSYGLQRVKLNH 893