Pairwise Alignments

Query, 1004 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 1053 a.a., HsdR family type I site-specific deoxyribonuclease (RefSeq) from Shewanella sp. ANA-3

 Score =  352 bits (902), Expect = e-100
 Identities = 301/1027 (29%), Positives = 476/1027 (46%), Gaps = 168/1027 (16%)

Query: 6   EWHFAERPAIERLQAMGYAVVP-----PADHAGLRDGDNQVLFRPHLVEALMRIN----- 55
           E+   E+PAI +L  +G+  +P     P      RD    V+    L +A+ RIN     
Sbjct: 5   EFDKVEQPAIAQLHQLGWHYIPGKALAPEHSNQERDYLRDVVLVKRLTQAIERINPWISE 64

Query: 56  -GIDEAAAKAAYGELAGIAD-NEAWLKVLRGDYSRKIDGFDTR--QTLRVIDFLTPANNL 111
             + +      + + AG+ + N  + + + G  S + D    +  QT+++IDF   +NN 
Sbjct: 65  ENLRKVVRMVTHPQCAGLMEYNHGFYQTMVGYLSVEQDLGKGKKGQTVKLIDFDDVSNNE 124

Query: 112 FTVTSQLRVKAEK-TRRPDLVIHVNGIPLVVIEAKSPLNVKDKTGEAFEQIKQYE----- 165
           F  T+Q +V+  K T  PD+V  VNG+PL VIE KSP  +        +Q+++Y      
Sbjct: 125 FICTNQFKVEGTKQTIIPDIVCFVNGLPLAVIECKSPF-ISTPVVCGIDQLRRYANQRHP 183

Query: 166 ---QDIPRLFASNAFNMVTDGALVLYGATGAPSKYYAEWRDPWPKAEADFAD-------P 215
              +   +LF  N   + T   +   G   +P++YYA+W+D +P  +A  A        P
Sbjct: 184 EDFEGAEKLFWYNQLMVSTSRDIARVGTISSPAQYYADWKDAYPLTDAQIAQVDSDNVVP 243

Query: 216 LAKGLWC----------------LLEPA----------------------RLLDLLAHYI 237
           LAK L                  + EP                         LD++ ++I
Sbjct: 244 LAKKLTVEQPVASVDAAGSELPQVAEPPADYQVAKVTAQQRLLAGMFSRENFLDIVRNFI 303

Query: 238 VFEKTDAGTIKKMCRYQQFRAVNRMVARVLEGKHRQ---GLIWHTQGSGKSLTMVFAALK 294
           +FE  D   IKK+ RYQQFRAVN+++ ++  GK R+   G++WHTQGSGKSLTMV  A+K
Sbjct: 304 LFEPDDGRLIKKVARYQQFRAVNKVIHQLKTGKTRKDKSGVVWHTQGSGKSLTMVMLAVK 363

Query: 295 LKTHRTIASDALTNPNILVLTDRIDLHGQISGTFLACG---LPNPTAIGSIKDLHTLIGS 351
           ++         L    ++ +TDR  L  Q+S TF       + N  ++ +++DL  L   
Sbjct: 364 MRHDLE-----LKQYKLVFVTDRTQLDEQLSATFQGAQGETVYNADSVAALRDL--LKKD 416

Query: 352 GQDGLTALSTIFKFQGSTQA-----------VANSANWIVMVDEAHRTQEKDLGAALRAT 400
             D +TA+  + KFQ + +            +  S   IV+ DEAHRTQ   L   + A 
Sbjct: 417 SSDLVTAM--VQKFQDAEKEAQQQGDKSFVNINTSDKIIVLADEAHRTQFGGLATTINAA 474

Query: 401 LPDARFFGFTGTPVKKDDK-DTYVNFGVPGEAYLDKYGIDDAVADGATVPIYYTGRKTDW 459
           LP+A   GFTGTP+ K  K DT   FG     Y+DKY I++AV DGATV + Y GR+   
Sbjct: 475 LPNAPKIGFTGTPLLKTQKMDTA--FG----GYIDKYKINEAVEDGATVRLLYEGREVKT 528

Query: 460 QMDEARIDILFDTWFAELDDDRLNEIKKR-GVEIEDLVKHPRRIELIAYDIWTHFKAYAR 518
            +    +D LF+ +F +   +   EIK++ GVE + + + P RI  +  D+  H++   R
Sbjct: 529 AVAGESLDALFEEYFGDYTKEEQQEIKRKYGVE-KAVREAPARIRWVCIDLLKHYRERIR 587

Query: 519 PDGFKAQIVAIDREAVILYKRALTRVIADDLQGEGMPAEAALARADAMSACVYSINQEDH 578
           PDGFKA IV   R A  L+K+ L     D+L+    P+E  ++               DH
Sbjct: 588 PDGFKAMIVVGSRHAATLFKKTL-----DELKAP--PSEVIISG--------------DH 626

Query: 579 KPSEDARRQDIRAALVENYLDAEAEKLA----KKAFG----------RAGEDPQFLIVCD 624
              +           +  Y D   +K      KK FG          R  ++  FLIV D
Sbjct: 627 NDPQ----------YIAQYTDKVHQKKVIANFKKPFGIDSPGTDEKQRKFDNTAFLIVKD 676

Query: 625 KLLTGFDCPIESVMYLDKPLKEHGLLQAIARTNRVSDARKRNGLIVDYIGVSAHLEAALA 684
            LLTGFD PI  VMY+D+ L++H L+QAIAR NR +   K  G +VDY G++++L  AL 
Sbjct: 677 MLLTGFDAPIAQVMYIDRKLQDHTLMQAIARVNR-NYKGKECGYVVDYYGLTSYLTDALE 735

Query: 685 SYRADDVKNAMRDLDDLRSQLRAAHAAVAAMLRPVARTARDRSGWEKEFNAFATALGSED 744
            + +DDV+   + L D   +L+AAH  + A  + V            + + +   L  + 
Sbjct: 736 LFSSDDVEGTYQSLKDELPKLQAAHTRLKAFFKGVT---------SDDVDDYVVVLKDDA 786

Query: 745 QWFTFKGRARAFIALYETLSPDPSVLDFTADLKWVASFLLFGTQRFEKRQAFDQMSYSEK 804
               F+   + F      + PD S   +  D+ +          R+ +    D +   EK
Sbjct: 787 FRAQFEVAYKRFAKQLNVILPDASAKPYIPDMTFFGKVHHAARNRY-RDDGMDLLDVGEK 845

Query: 805 IREMLDTHLDATGLSVTVKLRHITDPGFWDDFDAEGKTDEELMTAAIRKTTELRKTVSER 864
           +R+++D H+ +TG+   +    +    F +    + K+ E   + A    + L+  ++  
Sbjct: 846 VRQLVDEHILSTGVDPKIPPVDLLAANFKEHVQ-KIKSPE---SKASEIESALKHHININ 901

Query: 865 IDDSPHQYGKFSERLRQLLERMESAQLSWADKLRAAEDLARDIA-AEDGAHVEAGLSAGA 923
           ++D P  Y   S RLR ++E+      +W  +L    ++  D++ A   A    GLS   
Sbjct: 902 LEDDPEYYRSLSLRLRDIIEKTAG---NWERQLELLLEMTNDLSTAHKQAAQNVGLSETE 958

Query: 924 FGVMQIL 930
           F    IL
Sbjct: 959 FAFYNIL 965