Pairwise Alignments

Query, 376 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 495 a.a., type I restriction-modification system, S subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 52.4 bits (124), Expect = 3e-11
 Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 27/168 (16%)

Query: 195 IPEGWKTGTVGEFFTLQRGFDITEKHASE--GKYPVVSSSGIS--------------YYH 238
           IPEGW +  +G    ++ G    +K+  +  G YPV     +S              +Y 
Sbjct: 5   IPEGWFSAVLGNAVDVKSGVGFPKKYQGKNSGDYPVYKVGDVSIAVTSKYGGLSEAGHYV 64

Query: 239 STSMILGPAVITGRKG-----------KLGQVHFIDGPCWPHDTTLWVKDFKGREPKFIY 287
           S S       +  R+G           KL +  F++      +  + V        +FIY
Sbjct: 65  SQSEAEELKGVIFREGTTLFAKIGEAVKLNRRAFVERNGLADNNVMAVVPNYTEMDRFIY 124

Query: 288 WFLRSLNLEKFDAATAVPTLNRNVVHALKCAFPPNSEQLLIAHHLDSI 335
           +F+R++NL     +T VP++ +  +  L  ++PP +EQ +IA  LD +
Sbjct: 125 YFMRTVNLSDVSRSTTVPSVRKGDIEELVISYPPLAEQKVIADKLDEL 172



 Score = 28.1 bits (61), Expect = 6e-04
 Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 9/92 (9%)

Query: 129 LAEFRFALPPLPEQRRIAEILSSVDEAIAATRAVIEQTRKVKQAVLERLLTKGIGHTRFK 188
           + E   + PPL EQ+ IA+ L  +   + +T+A ++    + ++  + +L   +      
Sbjct: 149 IEELVISYPPLAEQKVIADKLDELLGQVESTKARLDAIPAILKSFRQSVLAAAVS----- 203

Query: 189 QTEIGEIPEGWKTGTVGEFFTLQRGFDITEKH 220
               G++ E W+     E       + + +KH
Sbjct: 204 ----GKLTEKWRDRNNSEMVHGGELYSLAKKH 231