Pairwise Alignments

Query, 376 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 416 a.a., type I restriction-modification enzyme, S subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 71.2 bits (173), Expect = 5e-17
 Identities = 68/264 (25%), Positives = 118/264 (44%), Gaps = 33/264 (12%)

Query: 129 LAEFRFALPPLPEQRRIAEILSSVDEAIAATRAVIEQTRKVKQAVLERLLTKGIGHTRFK 188
           + EF   LPPL EQ++IA ILS+ D+AI     +IE +++ K+A++++LLT   G  R  
Sbjct: 149 IKEFPILLPPLTEQKKIARILSTWDKAIETVDKLIENSKQQKKALMQQLLT---GKKRLP 205

Query: 189 QTEIGEIPEGWKTGTVGEFFTLQRGFDITEKH--------ASEGKYPVVSSSGISYYHST 240
               GE    WK   +G+ F +  G   + K+        AS  K+  +S     +   T
Sbjct: 206 GFS-GE----WKEVRLGDLFQVTIGGTPSRKNNAYWDQLKASGNKWVAISDLKNKFLVET 260

Query: 241 SMILGPA--------------VITGRKGKLGQVHFIDGPCWPHDT-TLWVKDFKGR-EPK 284
           +  +  A              VI   K  +G+       C+ ++    ++   K   +  
Sbjct: 261 NEYITDAGAANSNVKLIPRLTVIMSFKLTIGKRAITKTQCYTNEAICAFIPKHKNEIDTN 320

Query: 285 FIYWFLRSLNL-EKFDAATAVPTLNRNVVHALKCAFPPNSEQLLIAHHLDSIEETERSQT 343
           F Y  L  ++L +  D A    T+N++ +  ++   P   EQ+ IA  +++ +  +    
Sbjct: 321 FFYHHLGIIDLVQDVDQAVKGKTINKSKIMKIRTKLPNLLEQIAIAQRIEAFDLQQEDYL 380

Query: 344 RNLASYEHMKSALMSDLLTGRKRV 367
           +        K ALM  LLTG++RV
Sbjct: 381 KTRIFLVKEKQALMQQLLTGKRRV 404



 Score = 38.9 bits (89), Expect = 3e-07
 Identities = 21/66 (31%), Positives = 35/66 (53%)

Query: 302 TAVPTLNRNVVHALKCAFPPNSEQLLIAHHLDSIEETERSQTRNLASYEHMKSALMSDLL 361
           TAVP ++   +       PP +EQ  IA  L + ++   +  + + + +  K ALM  LL
Sbjct: 139 TAVPHISAQQIKEFPILLPPLTEQKKIARILSTWDKAIETVDKLIENSKQQKKALMQQLL 198

Query: 362 TGRKRV 367
           TG+KR+
Sbjct: 199 TGKKRL 204