Pairwise Alignments

Query, 495 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 537 a.a., type I restriction-modification system, M subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 99.8 bits (247), Expect = 2e-25
 Identities = 101/410 (24%), Positives = 166/410 (40%), Gaps = 67/410 (16%)

Query: 6   SQLETHLWRAADILRGS-IDSGDYKHYIFGLLFFKRLSDVWEEEYEDRLARYRDATLAAD 64
           S +   LW   D+LR   I+  DY   +  LLF K +     E  E  L           
Sbjct: 8   SDIVQKLWNLCDVLRDDGINYSDYVTELVLLLFIKMV----HENTEAGLL---------- 53

Query: 65  PEEHRFDIPKGHFWKDI------------RRHTTDIGAHLNAAFHAIEDANQRLRGVFQD 112
              ++  +P G  W D+            +R    +    ++  + +  A+  +  ++ D
Sbjct: 54  ---NKHTLPTGCRWTDLNDKDGLNLLDDYKRILLTLSTGKDSEGNTLH-ADPLILAIYAD 109

Query: 113 VDFNNKERFPDAMLEKLLQHFEAHRLRKADVEPDMLGQAYEYLIERFADDSGKKGGEFYT 172
                +E      L K L   +    +K     D LG  YE L+E+ A+++    G+++T
Sbjct: 110 AQTRLREPRHLKQLIKSLDSIDWFSAQK-----DGLGDLYEGLLEKNANETKSGAGQYFT 164

Query: 173 PKMVVRLIVECLKPDEGMSIYDPTCGSGGMLLEAAHHLERLGKNPKSIFL---------- 222
           P+ ++  +V  + P  G  I DP  G+ G L+ AAH   +   N   + L          
Sbjct: 165 PRALIDSMVRVINPQAGEVIQDPAAGTAGFLI-AAHEFIKNADNYDDLTLKEIEHLRNKA 223

Query: 223 -FGQEKNLNTWAICQMNLFLHDI---DDAKVARGDTLLEPKHLTGEGVKAIRTFDRVLAN 278
             G E   +T  +  MN  LH +   D+  V  G++L       G+   ++   D +LAN
Sbjct: 224 FIGVELVPSTRRLALMNCLLHGMEGDDEGVVHLGNSL-------GQVGMSLPKADIILAN 276

Query: 279 PPFSLKSWGH-EVWREGDAYGRDAYGCPPKSYGDLAFVQHMVASLKADGVCGVVLPHGVL 337
           PPF     G   + R+   Y        P S   LAF+QH+  +LK  G   VVLP  VL
Sbjct: 277 PPFGTSKGGDASITRDDLTY--------PTSNKQLAFLQHIYRNLKPGGRAAVVLPDNVL 328

Query: 338 FRGGAEGRIREGMIRDDLVEAVIGLAPNLFYGAGIPACILILRRKKPKDR 387
           F  G    +R  ++    +  ++ L   +FY AG+   +L   +    D+
Sbjct: 329 FEAGVGTDVRRDLMYKCNLHTILRLPTGIFYAAGVKTNVLFFTKGSEADK 378