Pairwise Alignments

Query, 418 a.a., Prophage integrase IntA from Xanthobacter sp. DMC5

Subject, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  136 bits (343), Expect = 1e-36
 Identities = 121/402 (30%), Positives = 180/402 (44%), Gaps = 31/402 (7%)

Query: 6   NRLTARTVASLKDPG---RYPDGGNLYLQIGPTGSKAWLFMFKRDGKRR--EMGLGSLND 60
           N LTAR + + K      R  DGGNLY  + P+ S++W F +KR G+ +   +  G+  D
Sbjct: 3   NNLTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPD 62

Query: 61  VTLAAARLKADEARRIVADGGDPFAVREAALAVRKEVEAAPTFGAFADALITKLAHGFRN 120
           ++LA AR KA EAR+ +ADG DP   +E   A +   E   TF   A+          + 
Sbjct: 63  MSLAEAREKALEARKQLADGIDPQLAKEEQKA-KTITEQNATFKFVAEQWKATKEGQIKE 121

Query: 121 EKHVAQWQMTLGPTYCTAIRDMKIADITAVDILKVLEPIW-QDKNETASRLRGRIERVLD 179
           +     W+  L       +  + ++ +TA   +  L PI  Q   ET  R    +  +++
Sbjct: 122 KTLEGNWRK-LELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMN 180

Query: 180 AAKVEGLRSGENPAQWKGNLQHRLSKRQKLQRGHHAALPYAEVPAFI--VALRARQAIAA 237
            A    + SG   A     ++    K + +   H  AL   E+   I  VA    Q +  
Sbjct: 181 YA----VNSGVIHANPLAGIRDVFKKHKVV---HMKALQPHEMHDLIRTVATANIQHVTR 233

Query: 238 RALEFAILTAARSGEVLGATWAEIDFKAAVWTVPATRMKAGREHRVPLSDAAVSVLREAE 297
             +E+ + T  R  E  GA W EID    +W +P  RMK  REH VPL+   +++L   +
Sbjct: 234 FLIEWQLHTMVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIK 293

Query: 298 P---HRRGDDPETAFVFPGLR-PMRPLSTMAMEMLLRRQ--KQVFTVHGFRSSFRDWAAE 351
           P   HR        F+FP  R P  P  +      L R   K   T HG R +       
Sbjct: 294 PISGHRE-------FIFPSSRNPKVPTDSETANKALGRMGFKDRTTAHGLR-ALASTTLN 345

Query: 352 ETSFPREIAEAALAHVVGDATERAYRRGDALEKRRDMMTAWA 393
           E  F  ++ EAALAH   +   +AY R D L+ RR +M+ W+
Sbjct: 346 EQGFEPDVIEAALAHTDKNQIRKAYNRTDYLDSRRKLMSWWS 387