Pairwise Alignments

Query, 418 a.a., Prophage integrase IntA from Xanthobacter sp. DMC5

Subject, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  148 bits (374), Expect = 3e-40
 Identities = 127/405 (31%), Positives = 194/405 (47%), Gaps = 27/405 (6%)

Query: 1   MAREMNRLTARTVASLKDPGRYP---DGGNLYLQIGPTGSKAWLFMFKR--DGKRREMGL 55
           MA+   +LT + + + K   +     DG  L L+I P GSK W+F + R  +GKR  +  
Sbjct: 1   MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF 60

Query: 56  GSLNDVTLAAARLKADEARRIVADGGDPFAVREAALAVRKEVEAAPTFGAFADALITKLA 115
           G   D++L  AR     A+ ++A G DP   R+    V KE+          D    K  
Sbjct: 61  GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIK-Q 119

Query: 116 HGFRNEKHVAQWQMTLGPTYCTAIRDMKIADITAVDILKVLEPIWQDKN-ETASRLRGRI 174
           +    +  +  W+ +L       I D  +  ITA +I+++L+PI    + ET  RL  R+
Sbjct: 120 NDVTPDYALDIWR-SLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRL 178

Query: 175 ERVLDAAKVEGLRSGENPAQWKGNLQHRLSKRQKLQRGHHAALPYAEVPAFIVALRARQA 234
             V++ A   GL    NP      L    +  +K ++ + AAL  AE+P  + A+ A  +
Sbjct: 179 NEVMNFATNCGLIQA-NP------LTGIKAAFKKPKKENMAALTPAELPELMSAI-ANAS 230

Query: 235 IAARA---LEFAILTAARSGEVLGATWAEIDFKAAVWTVPATRMKAGREHRVPLSDAAVS 291
           I       LE+ + T  R  E  GA W EI+++  VWT+PA RMK  REHR+PL++  ++
Sbjct: 231 IKRTTRCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLA 290

Query: 292 VLREAEPHRRGDDPETAFVFPGLR-PMRPLSTMAMEMLLRRQKQV--FTVHGFRSSFRDW 348
           +L   +P     D    F+FP  R P +P ++    M L+R         HG R S    
Sbjct: 291 LLEVMKPISGHRD----FIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLR-SLAST 345

Query: 349 AAEETSFPREIAEAALAHVVGDATERAYRRGDALEKRRDMMTAWA 393
              E  F  ++ E+ALAHV  +    AY R D LE+R+ MM  W+
Sbjct: 346 TLNEQGFDPDLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWS 390