Pairwise Alignments

Query, 418 a.a., Prophage integrase IntA from Xanthobacter sp. DMC5

Subject, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  137 bits (344), Expect = 8e-37
 Identities = 123/424 (29%), Positives = 196/424 (46%), Gaps = 37/424 (8%)

Query: 1   MAREMNRLTARTVASLKDPGR---YPDGGNLYLQIGPTGSKAWLFMFKRD--GKRREMGL 55
           MA+ +  LT   V   K+  +     DG  L L++   G+K W+  +      KR  +  
Sbjct: 1   MAKRVVPLTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISF 60

Query: 56  GSLNDVTLAAARLKADEARRIVADGGDPFAVREAALAVRKEVEAAPTFGAFADALITKLA 115
           G   DV+LA AR +  EA+ ++A   DP   ++  L +++  E   TFG ++D  +T   
Sbjct: 61  GCFPDVSLAEARKRRSEAKTLLALNIDPKQHKDEQL-LKERAELENTFGKYSDRWLTLKR 119

Query: 116 HGFRNEKHVAQWQMTLGPTYCTAIRDMKIADITAVDILKVLEPIW-QDKNETASRLRGRI 174
              + E     ++  L       + ++ I DI    +L +LEP+  Q   ET  RL   I
Sbjct: 120 ESVKPETADKAYR-ALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRII 178

Query: 175 ERVLDAAKVEGLRSGENPAQWKGNLQHRLSKRQKLQRGHHAALPYAEVPAFIVAL-RARQ 233
             V+  A    + SG+    +  ++  +L    K Q  H   +    +P  + A+  A  
Sbjct: 179 NEVMRLA----VASGDIEVNYLADIT-KLFPAPKRQ--HMVTIEPERLPELMQAIANANI 231

Query: 234 AIAARAL-EFAILTAARSGEVLGATWAEIDFKAAVWTVPATRMKAGREHRVPLSDAAVSV 292
            +A R L E+ + T  R  E   A W +IDFK  VW +PA RMK  R H +PL++  +++
Sbjct: 232 TLATRCLLEWQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLAL 291

Query: 293 LREAEP---HRRGDDPETAFVFPGLR-PMRPLSTMAMEMLLRRQ--KQVFTVHGFRSSFR 346
           L   +P   HR        ++FP  + P   +++ +  M L+R   K     HG R +  
Sbjct: 292 LEIMKPISSHRE-------YIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLR-ALA 343

Query: 347 DWAAEETSFPREIAEAALAHVVGDATERAYRRGDALEKRRDMMTAW------ATFCTTEP 400
                E  F  +I EAALAHV  +   +AY R + LE+RR +M+ W      A+ C T  
Sbjct: 344 STTLNEQGFNPDIIEAALAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHITSASNCNTSL 403

Query: 401 AEQK 404
           AE+K
Sbjct: 404 AERK 407