Pairwise Alignments

Query, 418 a.a., Prophage integrase IntA from Xanthobacter sp. DMC5

Subject, 402 a.a., integrase DNA protein from Sinorhizobium meliloti 1021

 Score =  190 bits (482), Expect = 8e-53
 Identities = 141/405 (34%), Positives = 196/405 (48%), Gaps = 28/405 (6%)

Query: 1   MAREMNRLTARTVASLKDPGRYPDGGNLYLQIGPTGSKAWLFMFKRDGKRREMGLGSLND 60
           M R + +LTA  V +   PG+Y DGG L+L     G   W+      G+RREMGLGS+++
Sbjct: 1   MPRPLYKLTAVAVKNAP-PGKYSDGGGLWLHKREDGGAQWILRVNVHGRRREMGLGSVSE 59

Query: 61  VTLAAARLKADEARRIVADGGDPFAVREAALAVRKEVEAAPTFGAF----ADALITKLAH 116
           V+L  AR  A+  R +V  G DP   R+     R+  EAA           DA  ++ A 
Sbjct: 60  VSLKEAREAAERWRSLVRGGLDPIKERQ-----RQRREAARNLHCLDDIARDAFESRKAE 114

Query: 117 GFRNEKHVAQWQMTLGPTYCTAIRDMKIADITAVDILKVLEPIWQDKNETASRLRGRIER 176
             + +    +W   L       +  + + DI   DI  VL PIW  K ETA +   R+  
Sbjct: 115 -LKGDGVAGRWFSPLEIHVLPRLGKVPVVDIDQTDIRDVLAPIWHSKAETARKALNRLAI 173

Query: 177 VLDAAKVEGLRSGENPAQWKGNLQHRLSKRQKLQRGHHAALPYAEVPAFIVALRARQAIA 236
            L  A   GL S +  A  K      L  +Q+ +  +  A+P+ +VP F  +L +   + 
Sbjct: 174 CLKHAAALGL-SVDLQATDKARA---LLGKQRHKPENIPAMPWRDVPIFYASL-SDGTVT 228

Query: 237 ARALEFAILTAARSGEVLGATWAEIDFKAAVWTVPATRMKAGR----EHRVPLSDAAVSV 292
             AL   ILT  RS  +      +I+    VWT+P   MK  R    + RVPLSDAA+ V
Sbjct: 229 HLALRLLILTGVRSAPLRFLREEQIN--GDVWTIPGEAMKGRRGATADFRVPLSDAALEV 286

Query: 293 LREAEPHRRGDDPETAFVFPGLRPMRPLSTMAMEMLLRRQKQVFTVHGFRSSFRDWAAEE 352
           + +A  H R       F+FP ++    +S   M  L+ R       HGFRSS RDW AE 
Sbjct: 287 IEQARRHAR-----EGFLFPSVKK-GVISDATMSRLMERAGMAARPHGFRSSLRDWIAEV 340

Query: 353 TSFPREIAEAALAHVVGDATERAYRRGDALEKRRDMMTAWATFCT 397
           T    ++AE  L H++G A ERAYRR D LE+RR +M  WA   T
Sbjct: 341 TEASHDVAETTLGHIIGGAVERAYRRTDFLEQRRALMVRWARHVT 385