Pairwise Alignments

Query, 418 a.a., Prophage integrase IntA from Xanthobacter sp. DMC5

Subject, 404 a.a., phage integrase family protein (RefSeq) from Shewanella sp. ANA-3

 Score = 87.0 bits (214), Expect = 9e-22
 Identities = 96/395 (24%), Positives = 161/395 (40%), Gaps = 52/395 (13%)

Query: 28  LYLQIGPTGSKAWLFMFKRDGKRREMGL--GSLNDVTLAAARLKADEARRIVADGGDPFA 85
           LY+++   G  +W   +  +GKRR M L  G    ++LA AR  A   ++ ++ GGDP A
Sbjct: 24  LYIRVQTEGKASWELRYTSNGKRRFMTLEGGQYPHMSLADARAAAAILKQSISKGGDPLA 83

Query: 86  VREAALAVRKEVEAAPTFGAFADALITKLAHGFRNEKHVAQWQMTLGPTYCTAIRDMKIA 145
            R A +   K       F  +      +L H   +E  +  +   + P     I  ++I 
Sbjct: 84  ER-AKIGQEKIQTVDDLFNDWFVDAKKRLKH---SEIPLRIYTKEVQPY----IGRLQIK 135

Query: 146 DITAVDILKVLEPI-WQDKNETASRLRGRIERVLDAAKVEGLRSGENPAQWKGNLQHRLS 204
           D+T +DI  +++ +   ++  TA+      +++   A   GL+ G NPA        + +
Sbjct: 136 DVTPLDIRNIIQKVAHSNRPTTANDTLLHCKKLFTHACKLGLKDG-NPAS-----HFKPA 189

Query: 205 KRQKLQRGHHAALPYAEVPAFIVALRARQAIAAR----ALEFAILTAARSGEVLGATWAE 260
               +++    AL   E+  F    +   +   R    A    +    R GE+L  TW E
Sbjct: 190 DAGGVEKSRERALSVEELKQFFSVAKDNISSFGRDNYLASALLVCLGVRKGELLKLTWQE 249

Query: 261 IDFKAAVWTVPATRMKAGREHRVPLSDAAVSVLREAE------------------PHRRG 302
           ID    +W +P  R K+ +   +PL D+ V    E +                  PH  G
Sbjct: 250 IDLNLKLWKLPQPRTKSSKAISIPLPDSVVEWFEELQIRACGSDYVFPNRKASKKPHVSG 309

Query: 303 DDPETA----FVFPGLRPMRPLSTMAMEMLLRRQKQVFTVHGFRSSFRDWAAEETSFPRE 358
           D    A    F     +  +P++ M        +   FT+H FR + R   A++   P  
Sbjct: 310 DTLNRAVASLFGHDSSKTRQPINRMG-------EIPYFTIHDFRRTCRSLLAKQ-GVPSH 361

Query: 359 IAEAALAHVVGDATERAYRRGDALEKRRDMMTAWA 393
           IAE  L H +    E  Y R D  ++R D + + A
Sbjct: 362 IAERCLNHKI-KGVEGIYDRYDYFDERLDALNSVA 395