Pairwise Alignments

Query, 416 a.a., Colistin resistance protein EmrA from Xanthobacter sp. DMC5

Subject, 301 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  216 bits (551), Expect = 6e-61
 Identities = 121/297 (40%), Positives = 178/297 (59%), Gaps = 2/297 (0%)

Query: 112 GYVKSVDVDTNQWVKAGDVIARIDDGDYRLALQSAENKIATQEATLSRFDQQETAARATV 171
           GYV   DV  NQ V+ G+++A+++D  +   +  AE  +A+ +A L     +     A +
Sbjct: 3   GYVVLSDVTDNQHVRKGELLAQLEDNQFIAKVNQAEASLASAKADLQTLAAKVELQHALI 62

Query: 172 DQMKAQLASAEADQRRAQAEFDRQDKLARSDFASRSTLDNARADKDKTAASVEAAKAAIA 231
            Q  A + +A+AD  RA+ +  R  KL  S+++S+  +D  +A  D  AA ++ AKA + 
Sbjct: 63  SQASAAVVAAKADNIRAEQQLSRAKKLKVSNYSSQDDVDQLQAGFDAAAAHLDEAKALLV 122

Query: 232 SAEAQVVVLAAQRTEASHVLDELKTARDQAKRDLDFTVVRAPIDGVVGNRAAQVGQLVQT 291
           + + ++ V  AQ  +A  V+++       A   L+ T V AP  GV+G R A VGQ VQ 
Sbjct: 123 AKQRELAVFNAQLNQARSVVEQADATLALANIQLNDTRVTAPFSGVIGKRGAMVGQYVQP 182

Query: 292 GTRLVAVVPLESVYVDANFKETQLGRLKPGQSVNVYVDAYPDHDFAGKVVSVSPASGSVF 351
           G  L ++VP  +V++ ANFKETQ+  ++PGQ V V +DA+PD  F G + S+SPASG+ F
Sbjct: 183 GQALYSLVPDGAVWITANFKETQIQHMQPGQVVQVSLDAFPDKTFTGVIDSLSPASGAKF 242

Query: 352 SLLPPENATGNFTKIVQRIPVRIAIDPNVLAKHELRPGMSVTATVDTKSAPATSTAA 408
           SLLP ENATGNFTKIVQRIPVRI ++    A+  + PG+S    VDT S P  + AA
Sbjct: 243 SLLPAENATGNFTKIVQRIPVRIRLELTEDAR--IVPGLSAVVKVDTSSHPTAAIAA 297